Little fixes in LTGA (Logging, deprecated method)

Refactored InterfaceOptimizer (Set* to set*)

src/eva2/OptimizerFactory.java

@@ -373,7 +373,7 @@ public class OptimizerFactory {
 		setTemplateOperators(problem, mutator, 1., new NoCrossover(), 0);
 
 		HillClimbing hc = new HillClimbing();
-		hc.SetIdentifier("-"+popSize+"-"+mutator.getStringRepresentation());
+		hc.setIdentifier("-"+popSize+"-"+mutator.getStringRepresentation());
 		hc.getPopulation().setTargetSize(popSize);
 		hc.addPopulationChangedEventListener(listener);
 		hc.SetProblem(problem);

src/eva2/server/go/strategies/BOA.java

@@ -592,7 +592,7 @@ public class BOA implements InterfaceOptimizer, java.io.Serializable {
 		return new SolutionSet(this.population);
 	}
 
-	public void SetIdentifier(String name) {
+	public void setIdentifier(String name) {
 		this.m_Identifier = name;
 	}
 

src/eva2/server/go/strategies/BinaryScatterSearch.java

@@ -723,7 +723,7 @@ public class BinaryScatterSearch implements InterfaceOptimizer, java.io.Serializ
 		return new SolutionSet(this.refSet);
 	}
 
-	public void SetIdentifier(String name) {
+	public void setIdentifier(String name) {
 		this.m_Identifier = name;
 	}
 

src/eva2/server/go/strategies/CHCAdaptiveSearchAlgorithm.java

@@ -261,7 +261,7 @@ public class CHCAdaptiveSearchAlgorithm implements InterfaceOptimizer, java.io.S
     /** This method allows you to set an identifier for the algorithm
      * @param name      The indenifier
      */
-     public void SetIdentifier(String name) {
+     public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
      public String getIdentifier() {

src/eva2/server/go/strategies/ClusterBasedNichingEA.java

@@ -996,7 +996,7 @@ public class ClusterBasedNichingEA implements InterfacePopulationChangedEventLis
     /** This method allows you to set an identifier for the algorithm
      * @param name      The indenifier
      */
-     public void SetIdentifier(String name) {
+     public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
      public String getIdentifier() {

src/eva2/server/go/strategies/ClusteringHillClimbing.java

@@ -97,7 +97,7 @@ InterfaceOptimizer, Serializable, InterfaceAdditionalPopulationInformer {
 		setLocalSearchMethod(getLocalSearchMethod());
 	}
 	
-     public void SetIdentifier(String name) {
+     public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
      public String getIdentifier() {

src/eva2/server/go/strategies/DifferentialEvolution.java

@@ -687,7 +687,7 @@ public class DifferentialEvolution implements InterfaceOptimizer, java.io.Serial
     /** This method allows you to set an identifier for the algorithm
      * @param name      The identifier
      */
-     public void SetIdentifier(String name) {
+     public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
      public String getIdentifier() {

src/eva2/server/go/strategies/EsDpiNiching.java

@@ -1062,7 +1062,7 @@ public class EsDpiNiching implements InterfaceOptimizer, Serializable, Interface
         return identifier;
     }
 
-    public void SetIdentifier(String name) {
+    public void setIdentifier(String name) {
         identifier = name;
     }
 

src/eva2/server/go/strategies/EvolutionStrategies.java

@@ -323,7 +323,7 @@ public class EvolutionStrategies implements InterfaceOptimizer, java.io.Serializ
      *
      * @param name The indenifier
      */
-    public void SetIdentifier(String name) {
+    public void setIdentifier(String name) {
         this.identifier = name;
     }
 

src/eva2/server/go/strategies/EvolutionaryProgramming.java

@@ -153,7 +153,7 @@ public class EvolutionaryProgramming implements InterfaceOptimizer, java.io.Seri
     /** This method allows you to set an identifier for the algorithm
      * @param name      The indenifier
      */
-    public void SetIdentifier(String name) {
+    public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
     public String getIdentifier() {

src/eva2/server/go/strategies/FloodAlgorithm.java

@@ -200,7 +200,7 @@ public class FloodAlgorithm implements InterfaceOptimizer, java.io.Serializable
     /** This method allows you to set an identifier for the algorithm
      * @param name      The indenifier
      */
-     public void SetIdentifier(String name) {
+     public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
      public String getIdentifier() {

src/eva2/server/go/strategies/GeneticAlgorithm.java

@@ -225,7 +225,7 @@ public class GeneticAlgorithm implements InterfaceOptimizer, java.io.Serializabl
         /** This method allows you to set an identifier for the algorithm
          * @param name      The indenifier
          */
-         public void SetIdentifier(String name) {
+         public void setIdentifier(String name) {
             this.m_Identifier = name;
         }
          public String getIdentifier() {

src/eva2/server/go/strategies/GradientDescentAlgorithm.java

@@ -316,7 +316,7 @@ public class GradientDescentAlgorithm implements InterfaceOptimizer, java.io.Ser
   /** This method allows you to set an identifier for the algorithm
    * @param name      The indenifier
    */
-  public void SetIdentifier(String name) {
+  public void setIdentifier(String name) {
     this.m_Identifier = name;
   }
 

src/eva2/server/go/strategies/HillClimbing.java

@@ -208,7 +208,7 @@ public class HillClimbing implements InterfaceOptimizer, java.io.Serializable {
     /** This method allows you to set an identifier for the algorithm
      * @param name      The indenifier
      */
-     public void SetIdentifier(String name) {
+     public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
      public String getIdentifier() {

src/eva2/server/go/strategies/InterfaceOptimizer.java

@@ -83,8 +83,9 @@ public interface InterfaceOptimizer {
     /** 
      * This method allows you to set an identifier for the algorithm
      * @param name      The identifier
+     * @deprecated
      */
-     public void SetIdentifier(String name);
+     public void setIdentifier(String name);
      public String getIdentifier();
 
     /**

src/eva2/server/go/strategies/IslandModelEA.java

@@ -109,7 +109,7 @@ public class IslandModelEA implements InterfacePopulationChangedEventListener, I
             this.m_Islands = new InterfaceOptimizer[this.m_numLocalCPUs];
             for (int i = 0; i < this.m_numLocalCPUs; i++) {
                 this.m_Islands[i] = (InterfaceOptimizer) this.m_Optimizer.clone();
-                this.m_Islands[i].SetIdentifier(""+i);
+                this.m_Islands[i].setIdentifier(""+i);
                 this.m_Islands[i].init();
                 if (this.m_LogLocalChanges)
                     this.m_Islands[i].addPopulationChangedEventListener(this);
@@ -129,7 +129,7 @@ public class IslandModelEA implements InterfacePopulationChangedEventListener, I
             this.m_Islands = new InterfaceOptimizer[nodesList.length];
             for (int i = 0; i < nodesList.length; i++) {
                 this.m_Islands[i] = (InterfaceOptimizer) RMIProxyRemoteThread.newInstance(this.m_Optimizer, nodesList[i]);
-                this.m_Islands[i].SetIdentifier(""+i);
+                this.m_Islands[i].setIdentifier(""+i);
                 this.m_Islands[i].init();
                 if (this.m_LogLocalChanges)
                     this.m_Islands[i].addPopulationChangedEventListener(myLocal);
@@ -178,7 +178,7 @@ public class IslandModelEA implements InterfacePopulationChangedEventListener, I
             this.m_Islands = new InterfaceOptimizer[this.m_numLocalCPUs];
             for (int i = 0; i < this.m_numLocalCPUs; i++) {
                 this.m_Islands[i] = (InterfaceOptimizer) this.m_Optimizer.clone();
-                this.m_Islands[i].SetIdentifier(""+i);
+                this.m_Islands[i].setIdentifier(""+i);
                 this.m_Islands[i].init();
                 if (this.m_LogLocalChanges)
                     this.m_Islands[i].addPopulationChangedEventListener(this);
@@ -196,7 +196,7 @@ public class IslandModelEA implements InterfacePopulationChangedEventListener, I
             this.m_Islands = new InterfaceOptimizer[nodesList.length];
             for (int i = 0; i < nodesList.length; i++) {
                 this.m_Islands[i] = (InterfaceOptimizer) RMIProxyRemoteThread.newInstance(this.m_Optimizer, nodesList[i]);
-                this.m_Islands[i].SetIdentifier(""+i);
+                this.m_Islands[i].setIdentifier(""+i);
                 this.m_Islands[i].init();
                 if (this.m_LogLocalChanges)
                     this.m_Islands[i].addPopulationChangedEventListener(myLocal);
@@ -390,7 +390,7 @@ public class IslandModelEA implements InterfacePopulationChangedEventListener, I
     /** This method allows you to set an identifier for the algorithm
      * @param name      The indenifier
      */
-     public void SetIdentifier(String name) {
+     public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
      public String getIdentifier() {

src/eva2/server/go/strategies/LTGA.java

@@ -25,10 +25,9 @@ import eva2.tools.math.SpecialFunction;
 
 public class LTGA implements InterfaceOptimizer, java.io.Serializable, InterfacePopulationChangedEventListener {
 
-	private static final Logger LOGGER = Logger.getLogger(BOA.class.getName());
+    private static final Logger LOGGER = Logger.getLogger(LTGA.class.getName());
     transient private InterfacePopulationChangedEventListener m_Listener = null;
     private String m_Identifier = "LTGA";
-	
     private int probDim = 8;
     private int fitCrit = -1;
     private int popSize = 50;
@@ -50,6 +49,7 @@ public class LTGA  implements InterfaceOptimizer, java.io.Serializable, Interfac
         this.template = (AbstractEAIndividual) template.clone();
     }
 
+    @Override
     public Object clone() {
         return new LTGA(this);
     }
@@ -76,9 +76,10 @@ public class LTGA  implements InterfaceOptimizer, java.io.Serializable, Interfac
         if (m_Listener == ea) {
             m_Listener = null;
             return true;
-		} else
+        } else {
             return false;
         }
+    }
 
     private void defaultInit() {
         if (population == null) {
@@ -92,8 +93,9 @@ public class LTGA  implements InterfaceOptimizer, java.io.Serializable, Interfac
         } else {
             Object dim = BeanInspector.callIfAvailable(problem,
                     "getProblemDimension", null);
-			if (dim == null)
-				LOGGER.log(Level.WARNING, "Coudn't get problem dimension!");
+            if (dim == null) {
+                LOGGER.log(Level.WARNING, "Couldn't get problem dimension!");
+            }
             probDim = (Integer) dim;
             ((InterfaceDataTypeBinary) this.template).SetBinaryGenotype(new BitSet(probDim));
         }
@@ -102,11 +104,11 @@ public class LTGA  implements InterfaceOptimizer, java.io.Serializable, Interfac
     }
 
     private static BitSet getBinaryData(AbstractEAIndividual indy) {
-		if (indy instanceof InterfaceGAIndividual)
+        if (indy instanceof InterfaceGAIndividual) {
             return ((InterfaceGAIndividual) indy).getBGenotype();
-		else if (indy instanceof InterfaceDataTypeBinary)
+        } else if (indy instanceof InterfaceDataTypeBinary) {
             return ((InterfaceDataTypeBinary) indy).getBinaryData();
-		else {
+        } else {
             throw new RuntimeException(
                     "Unable to get binary representation for "
                     + indy.getClass());
@@ -131,8 +133,7 @@ public class LTGA  implements InterfaceOptimizer, java.io.Serializable, Interfac
      * evaluate the given Individual and increments the counter. if the
      * individual is null, only the counter is incremented
      *
-	 * @param indy
-	 *            the individual you want to evaluate
+     * @param indy the individual you want to evaluate
      */
     private void evaluate(AbstractEAIndividual indy) {
         // evaluate the given individual if it is not null
@@ -300,9 +301,10 @@ public class LTGA  implements InterfaceOptimizer, java.io.Serializable, Interfac
      * Something has changed
      */
     protected void firePropertyChangedEvent(String name) {
-		if (this.m_Listener != null)
+        if (this.m_Listener != null) {
             this.m_Listener.registerPopulationStateChanged(this, name);
         }
+    }
 
     @Override
     public Population getPopulation() {
@@ -320,7 +322,7 @@ public class LTGA  implements InterfaceOptimizer, java.io.Serializable, Interfac
     }
 
     @Override
-	public void SetIdentifier(String name) {
+    public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
 
@@ -346,16 +348,14 @@ public class LTGA  implements InterfaceOptimizer, java.io.Serializable, Interfac
 
     @Override
     public void freeWilly() {
-		
     }
 
-	@SuppressWarnings("deprecation")
     @Override
     public void registerPopulationStateChanged(Object source, String name) {
         // The events of the interim hill climbing population will be caught here 
         if (name.compareTo(Population.funCallIntervalReached) == 0) {
             // set funcalls to real value
-			this.population.SetFunctionCalls(((Population)source).getFunctionCalls());
+            this.population.setFunctionCalls(((Population) source).getFunctionCalls());
             this.firePropertyChangedEvent(Population.nextGenerationPerformed);
         }
     }
@@ -393,5 +393,4 @@ public class LTGA  implements InterfaceOptimizer, java.io.Serializable, Interfac
         System.out.println(p.getFunctionCalls() + "\t" + p.size());
         System.out.println(p.getBestEAIndividual().getStringRepresentation());
     }
-
 }

src/eva2/server/go/strategies/MemeticAlgorithm.java

@@ -255,7 +255,7 @@ public class MemeticAlgorithm implements InterfaceOptimizer,
 	 * @param name
 	 *          The indenifier
 	 */
-	public void SetIdentifier(String name) {
+	public void setIdentifier(String name) {
 		this.m_Identifier = name;
 	}
 

src/eva2/server/go/strategies/MonteCarloSearch.java

@@ -182,7 +182,7 @@ public class MonteCarloSearch implements InterfaceOptimizer, java.io.Serializabl
     /** This method allows you to set an identifier for the algorithm
      * @param name      The indenifier
      */
-     public void SetIdentifier(String name) {
+     public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
      public String getIdentifier() {

src/eva2/server/go/strategies/MultiObjectiveCMAES.java

@@ -74,10 +74,10 @@ public class MultiObjectiveCMAES implements InterfaceOptimizer, Serializable {
 	 * (non-Javadoc)
 	 * 
 	 * @see
-	 * eva2.server.go.strategies.InterfaceOptimizer#SetIdentifier(java.lang.
+	 * eva2.server.go.strategies.InterfaceOptimizer#setIdentifier(java.lang.
 	 * String)
 	 */
-	public void SetIdentifier(String name) {
+	public void setIdentifier(String name) {
 		m_Identifier = name;
 	}
 

src/eva2/server/go/strategies/MultiObjectiveEA.java

@@ -201,7 +201,7 @@ public class MultiObjectiveEA implements InterfaceOptimizer, java.io.Serializabl
     /** This method allows you to set an identifier for the algorithm
      * @param name      The indenifier
      */
-     public void SetIdentifier(String name) {
+     public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
      public String getIdentifier() {

src/eva2/server/go/strategies/NelderMeadSimplex.java

@@ -58,7 +58,7 @@ public class NelderMeadSimplex implements InterfaceOptimizer, Serializable, Inte
 		return new NelderMeadSimplex(this);
 	}
 
-	public void SetIdentifier(String name) {
+	public void setIdentifier(String name) {
 		m_Identifier = name;
 	}
 

src/eva2/server/go/strategies/NichePSO.java

@@ -1234,7 +1234,7 @@ public class NichePSO implements InterfaceAdditionalPopulationInformer, Interfac
 	 * This method allows you to set an identifier for the algorithm
 	 * @param name      The indenifier
 	 */
-	public void SetIdentifier(String name) {
+	public void setIdentifier(String name) {
 		this.m_Identifier = name;
 	}
 	

src/eva2/server/go/strategies/ParticleFilterOptimization.java

@@ -282,7 +282,7 @@ public class ParticleFilterOptimization implements InterfaceOptimizer, java.io.S
     /** This method allows you to set an identifier for the algorithm
      * @param name      The indenifier
      */
-     public void SetIdentifier(String name) {
+     public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
      public String getIdentifier() {

src/eva2/server/go/strategies/ParticleSwarmOptimization.java

@@ -1712,7 +1712,7 @@ public class ParticleSwarmOptimization implements InterfaceOptimizer, java.io.Se
      *
      * @param name The indenifier
      */
-    public void SetIdentifier(String name) {
+    public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
 

src/eva2/server/go/strategies/PopulationBasedIncrementalLearning.java

@@ -180,7 +180,7 @@ public class PopulationBasedIncrementalLearning implements InterfaceOptimizer, j
     /** This method allows you to set an identifier for the algorithm
      * @param name      The indenifier
      */
-     public void SetIdentifier(String name) {
+     public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
      public String getIdentifier() {

src/eva2/server/go/strategies/ScatterSearch.java

@@ -664,7 +664,7 @@ public class ScatterSearch implements InterfaceOptimizer, java.io.Serializable,
 
 ///////////// Trivials...
 
-	public void SetIdentifier(String name) {
+	public void setIdentifier(String name) {
 		m_Identifier = name;
 	}
 

src/eva2/server/go/strategies/SimulatedAnnealing.java

@@ -201,7 +201,7 @@ public class SimulatedAnnealing implements InterfaceOptimizer, java.io.Serializa
     /** This method allows you to set an identifier for the algorithm
      * @param name      The indenifier
      */
-     public void SetIdentifier(String name) {
+     public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
      public String getIdentifier() {

src/eva2/server/go/strategies/SteadyStateGA.java

@@ -152,7 +152,7 @@ public class SteadyStateGA implements InterfaceOptimizer, java.io.Serializable {
         /** This method allows you to set an identifier for the algorithm
          * @param name      The indenifier
          */
-         public void SetIdentifier(String name) {
+         public void setIdentifier(String name) {
             this.m_Identifier = name;
         }
          public String getIdentifier() {

src/eva2/server/go/strategies/ThresholdAlgorithm.java

@@ -192,7 +192,7 @@ public class ThresholdAlgorithm implements InterfaceOptimizer, java.io.Serializa
     /** This method allows you to set an identifier for the algorithm
      * @param name      The indenifier
      */
-     public void SetIdentifier(String name) {
+     public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
      public String getIdentifier() {

src/eva2/server/go/strategies/Tribes.java

@@ -715,7 +715,7 @@ public class Tribes implements InterfaceOptimizer, java.io.Serializable {
 
 	public void freeWilly() {}
 
-	public void SetIdentifier(String name) {
+	public void setIdentifier(String name) {
 		this.m_Identifier = name;
 	}
 	public String getIdentifier() {

src/eva2/server/go/strategies/WingedMultiObjectiveEA.java

@@ -246,7 +246,7 @@ public class WingedMultiObjectiveEA implements InterfaceOptimizer, java.io.Seria
     /** This method allows you to set an identifier for the algorithm
      * @param name      The indenifier
      */
-     public void SetIdentifier(String name) {
+     public void setIdentifier(String name) {
         this.m_Identifier = name;
     }
      public String getIdentifier() {