Refactoring foo

src/eva2/OptimizerFactory.java

@@ -627,9 +627,9 @@ public class OptimizerFactory {
         if (params != null) {
             opt = new OptimizerRunnable(params, outputFilePrefix);
             if (terminator != null) {
-                opt.getGOParams().setTerminator(terminator);
+                opt.getOptimizationParameters().setTerminator(terminator);
             } else {
-                opt.getGOParams().setTerminator(getTerminator());
+                opt.getOptimizationParameters().setTerminator(getTerminator());
             }
         }
         return opt;

src/eva2/OptimizerRunnable.java

@@ -42,7 +42,7 @@ public class OptimizerRunnable implements Runnable {
      * @param params
      * @param outputFilePrefix
      */
-    public OptimizerRunnable(OptimizationParameters params, String outputFilePrefix) {
+    public OptimizerRunnable(InterfaceOptimizationParameters params, String outputFilePrefix) {
         this(params, outputFilePrefix, false);
     }
 
@@ -53,7 +53,7 @@ public class OptimizerRunnable implements Runnable {
      * @param params
      * @param restart
      */
-    public OptimizerRunnable(OptimizationParameters params, boolean restart) {
+    public OptimizerRunnable(InterfaceOptimizationParameters params, boolean restart) {
         this(params, new StatisticsDummy(), restart);
     }
 
@@ -66,7 +66,7 @@ public class OptimizerRunnable implements Runnable {
      * @param outputFilePrefix
      * @param restart
      */
-    public OptimizerRunnable(OptimizationParameters params, String outputFilePrefix, boolean restart) {
+    public OptimizerRunnable(InterfaceOptimizationParameters params, String outputFilePrefix, boolean restart) {
         this(params, new StatisticsStandalone(outputFilePrefix), restart);
     }
 
@@ -75,10 +75,10 @@ public class OptimizerRunnable implements Runnable {
      * If restart is true, the processor will not reinitialize the population allowing search on predefined populations.
      *
      * @param params
-     * @param outputFilePrefix
+     * @param stats
      * @param restart
      */
-    public OptimizerRunnable(OptimizationParameters params, InterfaceStatistics stats, boolean restart) {
+    public OptimizerRunnable(InterfaceOptimizationParameters params, InterfaceStatistics stats, boolean restart) {
         rnblID = cntID;
         cntID++;
 
@@ -106,7 +106,7 @@ public class OptimizerRunnable implements Runnable {
         return rnblID;
     }
 
-    public InterfaceOptimizationParameters getGOParams() {
+    public InterfaceOptimizationParameters getOptimizationParameters() {
         return proc.getOptimizationParameters();
     }
 
@@ -114,7 +114,7 @@ public class OptimizerRunnable implements Runnable {
         return proc.getStatistics();
     }
 
-    public void setStats(InterfaceStatistics stats) {
+    public void setStatistics(InterfaceStatistics stats) {
         if (proc.isOptimizationRunning()) {
             throw new RuntimeException("Error - cannot change statistics instance during optimization.");
         }

src/eva2/optimization/operator/postprocess/PostProcess.java

@@ -813,11 +813,11 @@ public class PostProcess {
      * Just execute the runnable.
      */
     private static void runPP(OptimizerRunnable rnbl) {
-        rnbl.getGOParams().setDoPostProcessing(false);
+        rnbl.getOptimizationParameters().setDoPostProcessing(false);
         rnbl.setVerbosityLevel(StatisticsParameter.VERBOSITY_NONE);
         ppRunnables.add(rnbl);
         rnbl.run();
-        rnbl.getGOParams().setDoPostProcessing(true);
+        rnbl.getOptimizationParameters().setDoPostProcessing(true);
         ppRunnables.remove(rnbl);
     }
 
@@ -901,7 +901,7 @@ public class PostProcess {
         InterfaceMultimodalProblemKnown mmp = (InterfaceMultimodalProblemKnown) problem;
         OptimizerRunnable runnable = OptimizerFactory.getOptRunnable(OptimizerFactory.STD_GA, problem, 100, null);
         runnable.run();
-        Population pop = runnable.getGOParams().getOptimizer().getPopulation();
+        Population pop = runnable.getOptimizationParameters().getOptimizer().getPopulation();
         Population found = getFoundOptima(pop, mmp.getRealOptima(), 0.05, true);
         System.out.println("all found (" + found.size() + "): " + BeanInspector.toString(found));
 

src/eva2/optimization/stat/AbstractStatistics.java

@@ -253,7 +253,7 @@ public abstract class AbstractStatistics implements InterfaceTextListener, Inter
     public void startOptimizationPerformed(String infoString, int runNumber, Object params, List<InterfaceAdditionalPopulationInformer> informerList) {
 
         if (runNumber == 0) {
-            // store the intial graph selection state, so that modifications during runtime cannot cause inconsistencies
+            // store the initial graph selection state, so that modifications during runtime cannot cause inconsistencies
             lastFieldSelection = (StringSelection) statisticsParameter.getFieldSelection().clone();
             lastIsShowFull = statisticsParameter.isOutputAllFieldsAsText();
 
@@ -305,20 +305,19 @@ public abstract class AbstractStatistics implements InterfaceTextListener, Inter
         if (printRunIntroVerbosity()) {
             printToTextListener("\n****** Multirun " + runNumber);
         }
+        /*
+        ToDo: Figure out if we need this. Right now it is just spamming the text output
         if (params != null) {
             if (printRunIntroVerbosity()) {
-                printToTextListener("\nModule parameters: ");
-            }
-            if (printRunIntroVerbosity()) {
+                printToTextListener("\nOptimization parameters: ");
                 printToTextListener(BeanInspector.niceToString(params));
             }
         }
         if (printRunIntroVerbosity()) {
             printToTextListener("\nStatistics parameters: ");
-        }
-        if (printRunIntroVerbosity()) {
             printToTextListener(BeanInspector.niceToString(getStatisticsParameter()) + '\n');
         }
+        */
         functionCalls = 0;
         fireDataListenersStartStop(runNumber, true, true);
     }
@@ -326,7 +325,7 @@ public abstract class AbstractStatistics implements InterfaceTextListener, Inter
     @Override
     public void stopOptimizationPerformed(boolean normal, String stopMessage) {
         if (lastSols == null) {
-            System.err.println("WARNING, possibly there was no call to createNextGenerationPerformed before calling stopOptimizationPerformed (AnstractStatistics).");
+            System.err.println("WARNING, possibly there was no call to createNextGenerationPerformed before calling stopOptimizationPerformed (AbstractStatistics).");
         }
 
         if (iterationCounter < sumDataCollection.size()) {

src/eva2/problems/MatlabProblem.java

@@ -366,7 +366,7 @@ public class MatlabProblem extends AbstractOptimizationProblem implements Interf
             runnable.setOutputFullStatsToText(outputAllStatsField);
 
             if (seedPopulation != null) {
-                runnable.getGOParams().getOptimizer().setPopulation(seedPopulation);
+                runnable.getOptimizationParameters().getOptimizer().setPopulation(seedPopulation);
                 runnable.setDoRestart(true);
                 log("Setting seed population of size " + seedPopulation.size() + ", target size " + seedPopulation.getTargetSize() + "\n");
                 log(BeanInspector.toString(seedPopulation.getStringRepresentation()) + "\n");
@@ -378,7 +378,7 @@ public class MatlabProblem extends AbstractOptimizationProblem implements Interf
                     System.err.println("mismatching value list for parameter arguments: " + specValues);
                 } else {
                     log("setting specific parameters...\n");
-                    InterfaceOptimizer opt = runnable.getGOParams().getOptimizer();
+                    InterfaceOptimizer opt = runnable.getOptimizationParameters().getOptimizer();
                     for (int i = 0; i < specParams.length; i++) { // loop over settings
                         log("try setting " + specParams[i] + " to " + specValues[i]);
                         String paramName = null;
@@ -481,7 +481,7 @@ public class MatlabProblem extends AbstractOptimizationProblem implements Interf
         if (runnable == null) {
             return 0;
         }
-        return runnable.getGOParams().getOptimizer().getPopulation().getFunctionCalls();
+        return runnable.getOptimizationParameters().getOptimizer().getPopulation().getFunctionCalls();
     }
 
     void exportResultPopulationToMatlab(Population pop) {

src/eva2/problems/WaitForEvARunnable.java

@@ -37,7 +37,7 @@ class WaitForEvARunnable implements Runnable {
             try {
                 mp.log("runnable.getDoubleSolution: " + BeanInspector.toString(runnable.getDoubleSolution()) + "\n");
                 mp.log("runnable.getIntegerSolution: " + BeanInspector.toString(runnable.getIntegerSolution()) + "\n");
-                mp.log("getAllSols best: " + AbstractEAIndividual.getDefaultDataString(runnable.getGOParams().getOptimizer().getAllSolutions().getSolutions().getBestEAIndividual()) + "\n");
+                mp.log("getAllSols best: " + AbstractEAIndividual.getDefaultDataString(runnable.getOptimizationParameters().getOptimizer().getAllSolutions().getSolutions().getBestEAIndividual()) + "\n");
                 mp.log("\n");
                 // write results back to matlab
                 mp.exportResultToMatlab(runnable);