Merging mk branch changes from rev 185, minor cleanup.

src/eva2/gui/FunctionArea.java

@@ -115,6 +115,13 @@ public class FunctionArea extends DArea implements Serializable {
 		 drawCircle(c+""+val, position, graphID);
 	 }
 	 
+	 public void drawCircle(String label, double xPos, double yPos, int graphID) {
+		 double[] pos = new double[2];
+		 pos[0]=xPos;
+		 pos[1]=yPos;
+		 drawCircle(label, pos, graphID);
+	 }
+	 
 	 /**
 	  * Plot a circle icon to the function area which is annotated with a char and
 	  * a double value. The color corresponds to the color of the graph with given ID

src/eva2/server/go/individuals/AbstractEAIndividual.java

@@ -763,7 +763,12 @@ public abstract class AbstractEAIndividual implements IndividualInterface, java.
 //        if (name.equalsIgnoreCase("Fitness")) return this.getFitness();
 //        if (name.equalsIgnoreCase("FitnessArray")) return this.getFitness();
     	Object data = m_dataHash.get(name);
-    	if (data==null) System.err.println("Warning: data key " + name + " unknown!");
+    	if (data==null) { // Fitness is actually in use... so lets have a minor special treatment
+    		if (name.compareToIgnoreCase("Fitness")==0) data = getFitness();
+    		else {
+    			EVAERROR.errorMsgOnce("Warning: data key " + name + " unknown (pot. multiple errors)!");
+    		}
+    	}
         return data;
     }
 

src/eva2/server/go/operators/selection/probability/InterfaceSelectionProbability.java

@@ -3,9 +3,9 @@ package eva2.server.go.operators.selection.probability;
 import eva2.server.go.populations.Population;
 
 /** The interface for methods with calculate the selection
- * propability from the fitness values. While the fitness
+ * probability from the fitness values. While the fitness
  * is typically to be minimized the selection probability
- * is within [0,1] summs up to one and is to be maximizes.
+ * is within [0,1] sums up to one and is to be maximizes.
  * Created by IntelliJ IDEA.
  * User: streiche
  * Date: 30.03.2004
@@ -22,7 +22,7 @@ public interface InterfaceSelectionProbability {
 
     /** This method computes the selection probability for each individual
      *  in the population. Note: Summed over the complete population the selection
-     *  probability sums up to one.
+     *  probability gives one.
      * @param population    The population to compute.
      * @param input         The name of the input.
      */
@@ -30,7 +30,7 @@ public interface InterfaceSelectionProbability {
 
     /** This method computes the selection probability for each individual
      *  in the population. Note: Summed over the complete population the selection
-     *  probability sums up to one.
+     *  probability gives one.
      * @param population    The population to compute.
      * @param input         The name of the input.
      */

src/wsi/ra/tool/BasicResourceLoader.java

@@ -34,18 +34,17 @@ import java.io.IOException;
 import java.io.InputStream;
 import java.io.InputStreamReader;
 import java.io.LineNumberReader;
-
 import java.net.URL;
-
 import java.util.ArrayList;
 import java.util.Enumeration;
 import java.util.List;
 import java.util.Properties;
+import java.util.Vector;
 import java.util.zip.ZipEntry;
 import java.util.zip.ZipFile;
 import java.util.zip.ZipInputStream;
 
-import wsi.ra.tool.DummyCategory;
+import eva2.tools.ReflectPackage;
 
 
 /**
@@ -324,6 +323,7 @@ public class BasicResourceLoader implements ResourceLoader
         // some f... special characters at the end which will not be shown
         // at the console output !!!
         resourceLocation = resourceLocation.trim();
+        InputStream in = null;
         
         // is a relative path defined ?
         // this can only be possible, if this is a file resource location
@@ -333,30 +333,58 @@ public class BasicResourceLoader implements ResourceLoader
                 ((resourceLocation.length() > 1) &&
                     (resourceLocation.charAt(1) == ':')))
         {
-            return getStreamFromFile(resourceLocation);
+            in = getStreamFromFile(resourceLocation);
+        }
+//        InputStream inTest = getStreamFromFile(resourceLocation);
+        
+        if (in == null) {
+        	in = ClassLoader.getSystemResourceAsStream(resourceLocation);
         }
 
-        InputStream in = ClassLoader.getSystemResourceAsStream(resourceLocation);
+        if (in == null) {
-
-        if (in == null)
-        {
             // try again for web start applications
             in = this.getClass().getClassLoader().getResourceAsStream(
                     resourceLocation);
         }
 
-        if (in == null)
+        if (in == null) {
-        {
+        	// try to search other classpathes...? not really necessary.
-            return null;
+//        	in = getStreamFromClassPath(resourceLocation);
         }
         
         if (logger.isDebugEnabled())
         {
-            logger.debug("Stream opened for " + resourceLocation);
+            if (in == null) logger.debug("Unable to open stream for " + resourceLocation);
+            else logger.debug("Stream opened for " + resourceLocation);
         }
         return in;
     }
     
+//    public InputStream getStreamFromClassPath(String resourceLocation) {
+//    	String[] dynCP = ReflectPackage.getValidCPArray(); 
+//    	Vector<String> found = new Vector<String>();
+//		for (int i=0; i<dynCP.length; i++) {
+//			System.out.println("reading element "+dynCP[i]);
+//			if (dynCP[i].endsWith(".jar")) {
+//				// those should be found somewhere else
+////				getClassesFromJarFltr(set, dynCP[i], pckg, includeSubs, reqSuperCls);
+//			} else {
+//				String absRes = dynCP[i];
+//				if (!absRes.endsWith("/")) absRes += "/";
+//				absRes += resourceLocation;
+//				System.out.println("reading from files: "+dynCP[i]);
+//				InputStream in = getStreamFromFile(absRes);
+//				if (in != null) found.add(absRes);
+//			}
+//		}
+//		if (found.size() == 0) return null;
+//		if (found.size()>1) {
+//			System.err.println("Warning, more than one instance of " + resourceLocation + " were found, returning first of:");
+//			for (int i=0; i<found.size(); i++) System.err.println(found.get(i));
+//		}
+//		return getStreamFromFile(found.get(0));
+//    }
+    
     /**
      *  Gets the byte data from a file at the given resource location.
      *
@@ -487,7 +515,7 @@ public class BasicResourceLoader implements ResourceLoader
         }
         catch (Exception e)
         {
-            logger.error(e.getMessage());
+        	if (logger.isDebugEnabled()) logger.error(e.getMessage());
 
             return null;
         }