Killed JavaEvA from comments and ressources, some maths refactored.

src/eva2/OptimizerFactory.java

@@ -54,7 +54,7 @@ import eva2.server.modules.GOParameters;
  * </p>
  * <p>
  * On the other hand this class provides an almost complete list of all
- * currently available optimization procedures in JavaEvA. The arguments passed
+ * currently available optimization procedures in EvA2. The arguments passed
  * to the methods initialize the respective optimization procedure. To perform
  * an optimization one has to do the following: <code>
  * InterfaceOptimizer optimizer = OptimizerFactory.createCertainOptimizer(arguments);

src/eva2/gui/BeanInspector.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/BigStringEditor.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture
@@ -37,9 +37,7 @@ public class BigStringEditor implements PropertyEditor {
     try {
       m_finished=false;
       BigStringEditor editor = new BigStringEditor();
-      //Source so = new Source ("\\javaeva\\server\\problems\\bench\\Problem_f1.java");
-//      Source so = new Source (file);
-//      editor.setValue(so);
+
       PropertyDialog frame = new PropertyDialog(editor,file, 50, 50);
       //frame.setSize(200, 200);
       frame.addWindowListener(new WindowAdapter() {
@@ -189,8 +187,7 @@ public class BigStringEditor implements PropertyEditor {
   public static void main (String[] args) {
     try {
       BigStringEditor editor = new BigStringEditor();
-//      Source so = new Source ("\\javaeva\\server\\problems\\bench\\Problem_f1.java");
-//      editor.setValue(so);
+
       PropertyDialog frame = new PropertyDialog(editor, "test", 50, 50);
       frame.setSize(200, 200);
       frame.addWindowListener(new WindowAdapter() {

src/eva2/gui/ComponentFilter.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/DataViewer.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/DataViewerInterface.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/Exp.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/ExtAction.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/ExtActionChangedListener.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/ExtDesktopManager.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/FunctionArea.java

@@ -1,7 +1,7 @@
 package eva2.gui;
 
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/GenericArrayEditor.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/GenericObjectEditor.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/Graph.java

@@ -3,7 +3,7 @@ package eva2.gui;
 import java.io.Serializable;
 
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/GraphPointSet.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/GraphWindow.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/HtmlDemo.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/JClassTree.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/JDocFrame.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/JEFrame.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture
@@ -17,15 +17,6 @@ import java.awt.event.WindowEvent;
 import java.awt.event.*;
 import java.awt.*;
 
-/**
- * Title:        The JavaEvA
- * Description:
- * Copyright:    Copyright (c) 2003
- * Company:
- * @author
- * @version 1.0
- */
-
 public class JEFrame extends JFrame {
 
   public JEFrame() {

src/eva2/gui/JEFrameRegister.java

@@ -1,7 +1,7 @@
 package eva2.gui;
 import java.util.ArrayList;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/JExtDesktopPane.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/JExtFileChooser.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/JExtMenu.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/JExtToolBar.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/JModuleGeneralPanel.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/JParaPanel.java

@@ -1,7 +1,7 @@
 package eva2.gui;
 
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/JTabbedModuleFrame.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/JTextEditorInternalFrame.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/JTextoutputFrame.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/JTextoutputFrameInterface.java

@@ -3,7 +3,7 @@ package eva2.gui;
 import eva2.server.stat.InterfaceTextListener;
 
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/LogPanel.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture
@@ -112,7 +112,6 @@ public class LogPanel extends JPanel {
       frame.pack();
       frame.setVisible(true);
       panel.logMessage("HI!");
-//      panel.statusMessage("Hi JavaEvA");
       panel.logMessage("Test");
 
     } catch (Exception e) {

src/eva2/gui/MultiLineString.java

@@ -1,10 +1,6 @@
 package eva2.gui;
 
 /**
- * <p>Title: The JavaEvA</p>
- * <p>Description: </p>
- * <p>Copyright: Copyright (c) 2003</p>
- * <p>Company: </p>
  * @author not attributable
  * @version 1.0
  */

src/eva2/gui/MultiLineStringEditor.java

@@ -6,7 +6,7 @@ import java.awt.event.*;
 
 
 /**
- * <p>Title: The JavaEvA</p>
+ * <p>Title: EvA2</p>
  * <p>Description: </p>
  * <p>Copyright: Copyright (c) 2003</p>
  * <p>Company: </p>

src/eva2/gui/Plot.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/PlotInterface.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/PropertyBoolSelector.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/PropertyDialog.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/PropertyPanel.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/PropertyRemoteServers.java

@@ -1,6 +1,5 @@
 package eva2.gui;
 
-//import javaeva.tools.ServerStarter;
 import java.rmi.Naming;
 import java.util.ArrayList;
 

src/eva2/gui/PropertySheetPanel.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/PropertySheetPanelStat.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/PropertySlider.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/PropertyText.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/PropertyValueSelector.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/SerializedObject.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/StatisticsEditor.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/TagEditor.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/TopoPlot.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/TreeElement.java

@@ -1,6 +1,6 @@
 package eva2.gui;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/gui/WindowCloseAction.java

@@ -1,67 +0,0 @@
-package eva2.gui;
-//package javaeva.gui;
-///*==========================================================================*
-// * IMPORTS
-// *==========================================================================*/
-//import javaeva.client.EvAClient;
-//import javax.swing.event.InternalFrameListener;
-//import javax.swing.event.InternalFrameEvent;
-//import javax.swing.JOptionPane;
-//import java.awt.event.ActionEvent;
-///*==========================================================================*
-//* CLASS DECLARATION
-//*==========================================================================*/
-///**
-// *
-// */
-//public class WindowCloseAction extends ExtAction implements InternalFrameListener{
-//  private EvAClient m_App;
-//  /**
-//  *
-//  */
-//  public WindowCloseAction(String s,String toolTip,EvAClient App){
-//    super(s, toolTip);
-//    m_App = App;
-//  }
-//  /**
-//  *
-//  */
-//  private void close(JDocFrame f){
-//    if(f == null) return;
-//    boolean doClose = false;
-//    if(f.isChanged()){
-//      switch(JOptionPane.showConfirmDialog(m_App.getDesktop(), "M<>chten Sie die <20>nderungen an "
-//              + f.getTitle() + " speichern?", "Frage", JOptionPane.YES_NO_CANCEL_OPTION)){
-//        case JOptionPane.YES_OPTION:
-//          System.out.println(f.getTitle() + " geschlossen, <20>nderungen gespeichert.");
-//          doClose = true;
-//          break;
-//        case JOptionPane.NO_OPTION:
-//          doClose = true;
-//          break;
-//        case JOptionPane.CANCEL_OPTION:;
-//      }
-//    }
-//    else
-//      doClose = true;
-//    if(doClose) f.dispose();
-//  }
-//  /**
-//  *
-//  */
-//  public void actionPerformed(ActionEvent e){
-//    close((JDocFrame)((ExtDesktopManager)m_App.getDesktop().getDesktopManager()).getActiveFrame());
-//  }
-//  public void internalFrameOpened(InternalFrameEvent e){}
-//  public void internalFrameClosed(InternalFrameEvent e){}
-//  public void internalFrameIconified(InternalFrameEvent e){}
-//  public void internalFrameDeiconified(InternalFrameEvent e){}
-//  public void internalFrameActivated(InternalFrameEvent e){}
-//  public void internalFrameDeactivated(InternalFrameEvent e){}
-//  /**
-//  *
-//  */
-//  public void internalFrameClosing(InternalFrameEvent e){
-//    close((JDocFrame)e.getSource());
-//  }
-//}

src/eva2/server/EvAMainAdapter.java

@@ -1,6 +1,6 @@
 package eva2.server;
 /**
- * Title:        javaeva
+ * Title:        EvA2
  * Description:  API for distributed and parallel computing.
  * Copyright:    Copyright (c) 2004
  * Company:      University of Tuebingen

src/eva2/server/EvAServer.java

@@ -1,6 +1,6 @@
 package eva2.server;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/server/ModuleServer.java

@@ -1,7 +1,7 @@
 package eva2.server;
 
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/server/go/CrossoverInterface.java

@@ -1,6 +1,6 @@
 package eva2.server.go;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/server/go/IndividualInterface.java

@@ -1,6 +1,6 @@
 package eva2.server.go;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/server/go/InterfaceProcessor.java

@@ -3,7 +3,7 @@ package eva2.server.go;
 import wsi.ra.jproxy.RemoteStateListener;
 
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/server/go/InterfaceTerminator.java

@@ -1,6 +1,6 @@
 package eva2.server.go;
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/server/go/MutationInterface.java

@@ -1,24 +0,0 @@
-package eva2.server.go;
-/*
- * Title:        JavaEvA
- * Description:
- * Copyright:    Copyright (c) 2003
- * Company:      University of Tuebingen, Computer Architecture
- * @author Holger Ulmer, Felix Streichert, Hannes Planatscher
- * @version:  $Revision: 306 $
- *            $Date: 2007-12-04 14:22:52 +0100 (Tue, 04 Dec 2007) $
- *            $Author: mkron $
- */
-/*==========================================================================*
- * IMPORTS
- *==========================================================================*/
-import eva2.server.stat.InterfaceStatistics;
-/*==========================================================================*
- * INTERFACE DECLARATION
- *==========================================================================*/
-/**
- *
- */
-public interface MutationInterface {
-  public void addStatisticsListner(InterfaceStatistics e);
-}

src/eva2/server/go/PopulationInterface.java

@@ -1,7 +1,7 @@
 package eva2.server.go;
 
 /*
- * Title:        JavaEvA
+ * Title:        EvA2
  * Description:
  * Copyright:    Copyright (c) 2003
  * Company:      University of Tuebingen, Computer Architecture

src/eva2/server/go/SelectionInterface.java

@@ -1,24 +0,0 @@
-package eva2.server.go;
-/*
- * Title:        JavaEvA
- * Description:
- * Copyright:    Copyright (c) 2003
- * Company:      University of Tuebingen, Computer Architecture
- * @author Holger Ulmer, Felix Streichert, Hannes Planatscher
- * @version:  $Revision: 306 $
- *            $Date: 2007-12-04 14:22:52 +0100 (Tue, 04 Dec 2007) $
- *            $Author: mkron $
- */
-/*==========================================================================*
- * IMPORTS
- *==========================================================================*/
-import eva2.server.stat.InterfaceStatistics;
-/*==========================================================================*
- * INTERFACE DECLARATION
- *==========================================================================*/
-/**
- *
- */
-public interface SelectionInterface {
-  public void addListener(InterfaceStatistics e);
-}

src/eva2/server/go/individuals/AbstractEAIndividual.java

@@ -17,6 +17,7 @@ import eva2.server.go.operators.mutation.InterfaceMutation;
 import eva2.server.go.operators.mutation.NoMutation;
 import eva2.server.go.populations.Population;
 import eva2.server.go.problems.InterfaceOptimizationProblem;
+import eva2.tools.EVAERROR;
 
 /** This is the abstract EA individual implementing the most important methods giving
  * access to mutation and crossover rates and operators, fitness values and selection
@@ -824,6 +825,25 @@ public abstract class AbstractEAIndividual implements IndividualInterface, java.
     	return getDefaultStringRepresentation(this);
     }
     
+	/**
+	 * For any AbstractEAIndividual try to convert its position to double[] and return it.
+	 * 
+	 * @param indy
+	 * @return double valued position of an individual
+	 */
+	public static double[] getDoublePosition(AbstractEAIndividual indy) {
+		if (indy instanceof InterfaceDataTypeDouble) {
+			return ((InterfaceDataTypeDouble)indy).getDoubleData();
+		} else if (indy instanceof InterfaceDataTypeInteger) {
+			int[] intData =  ((InterfaceDataTypeInteger)indy).getIntegerData();
+			double[] pos = new double[intData.length];
+			for (int i=0; i<intData.length; i++) pos[i] = (double)intData[i];
+			return pos;
+		} // TODO some more here?
+		EVAERROR.errorMsgOnce("Unhandled case in AbstractEAIndividual.getPosition()!");
+		return null;
+	}
+    
 /**********************************************************************************************************************
  * Implementing the Individual Interface
  */

src/eva2/server/go/individuals/ESIndividualDoubleData.java

@@ -62,7 +62,6 @@ public class ESIndividualDoubleData extends AbstractEAIndividual implements Inte
             this.m_Fitness[i] = individual.m_Fitness[i];
         }
         cloneAEAObjects((AbstractEAIndividual) individual);
-
     }
 
     public Object clone() {

src/eva2/server/go/individuals/InterfaceDataTypePermutation.java

@@ -4,7 +4,7 @@ package eva2.server.go.individuals;
 /** This interface gives access to a permutation phenotype and except 
  * for problemspecific operators should only be used by the
  * optimization problem.
- * <p>Title: The JavaEvA</p>
+ * <p>Title: EvA2</p>
  *
  * <p>Description: </p>
  *

src/eva2/server/go/individuals/InterfaceOBGAIndividual.java

@@ -2,7 +2,7 @@ package eva2.server.go.individuals;
 
 /** This interface gives access to a permutation genotype and should
  * only be used by mutation and crossover operators.
- * <p>Title: The JavaEvA</p>
+ * <p>Title: EvA2</p>
  * <p>Description: </p>
  * <p>Copyright: Copyright (c) 2003</p>
  * <p>Company: </p>

src/eva2/server/go/individuals/OBGAIndividualPermutationData.java

@@ -11,7 +11,7 @@ import wsi.ra.math.RNG;
 
 /** This individual uses a permutation based genotype to code for
  * permutations.
- * <p>Title: The JavaEvA</p>
+ * <p>Title: EvA2</p>
  * <p>Description: </p>
  * <p>Copyright: Copyright (c) 2003</p>
  * <p>Company: </p>

src/eva2/server/go/mocco/MOCCOPhase.java

@@ -104,7 +104,7 @@ public abstract class MOCCOPhase implements InterfaceProcessElement {
         }
     }
 
-    /** This method makes a helptext element similar to that used in JavaEvA
+    /** This method makes a helptext element similar to that used in EvA
      * @param help  The text to display
      * @return the helptext component
      */
@@ -112,7 +112,7 @@ public abstract class MOCCOPhase implements InterfaceProcessElement {
         return this.makeInformationText("Info", help);
     }
 
-    /** This method makes a helptext element similar to that used in JavaEvA
+    /** This method makes a helptext element similar to that used in EvA
      * @param title  The title of the help text
      * @param help  The text to display
       * @return the helptext component

src/eva2/server/go/mocco/MOCCOProblemInitialization.java

@@ -56,7 +56,6 @@ public class MOCCOProblemInitialization extends MOCCOPhase implements InterfaceP
         JComponent  tmpC        = new JPanel();
         tmpC.setLayout(new BorderLayout());
         
-//        this.m_ProblemChooser.setModel(new DefaultComboBoxModel(this.getClassAlternatives4("javaeva.server.oa.go.OptimizationProblems.InterfaceMultiObjectiveDeNovoProblem")));
         Class[] altern = null;
 		try {
 			altern = ReflectPackage.getAssignableClassesInPackage("eva2.server.oa.go.OptimizationProblems", Class.forName("eva2.server.oa.go.OptimizationProblems.InterfaceMultiObjectiveDeNovoProblem"), true, true);

src/eva2/server/go/operators/archiving/ArchivingNSGAII.java

@@ -100,7 +100,7 @@ public class ArchivingNSGAII extends ArchivingNSGA implements java.io.Serializab
         pop.SetArchive(archive);
     }
 
-    /** This method will dissect a given populaiton into n pareto-fronts
+    /** This method will dissect a given population into n pareto-fronts
      * @param pop   The population to analyse
      * @return Population[] the n pareto-fronts
      */

src/eva2/server/go/operators/archiving/ArchivingSPEAII.java

@@ -116,7 +116,7 @@ public class ArchivingSPEAII extends AbstractArchiving implements java.io.Serial
 //            this.tz = true;
 //            this.calculateRawFitness(tmpPop);
 //            this.tz = false;
-//            this.m_Plot = new javaeva.gui.Plot("Debug SPEAII", "Y1", "Y2");
+//            this.m_Plot = new eva2.gui.Plot("Debug SPEAII", "Y1", "Y2");
 //            // plot the population
 //            this.m_Plot.setUnconnectedPoint(0, 0, 11);
 //            this.m_Plot.setUnconnectedPoint(1.2, 2.0, 11);

src/eva2/server/go/operators/cluster/ClusteringDensityBased.java

@@ -87,7 +87,7 @@ public class ClusteringDensityBased implements InterfaceClustering, java.io.Seri
         ConnectionMatrix    = new boolean[pop.size()][pop.size()];
         Clustered           = new boolean[pop.size()];
         AbstractEAIndividual   tmpIndy1, tmpIndy2;
-        Population              PopulationOfUnclustered = new Population(), Cluster, template;
+        Population              PopulationOfUnclustered, Cluster, template;
         ArrayList<Population>               ClusteredPopulations = new ArrayList<Population>();
 
         template = (Population)pop.clone();

src/eva2/server/go/operators/cluster/ClusteringKMeans.java

@@ -202,19 +202,24 @@ public class ClusteringKMeans implements InterfaceClustering, java.io.Serializab
         return result;
     }
 
-    /** This mehtod allows you to cluster a population using m_C
+    /** This method allows you to cluster a population using m_C
      * @param pop   The population
      * @param c     The centroids
-     * @return The clusters as populaitons
+     * @return The clusters as populations
      */
     public Population[] cluster(Population pop, double[][] c) {
         Population[]    result  = new Population[c.length];
         double[][]      data    = this.extractClusterDataFrom(pop);
         int             clusterAssigned;
 
-        for (int i = 0; i < result.length; i++) {
-        	result[i] = new Population();
-        	result[i].setSameParams(pop);
+        try {
+        	for (int i = 0; i < result.length; i++) {
+        		result[i] = pop.getClass().newInstance();
+        		result[i].setSameParams(pop);
+        	}
+        } catch(Exception e) {
+        	System.err.println("problems instantiating " + pop.getClass().getName() + " for clustering!");
+        	e.printStackTrace();
         }
         // let's assign the elements of the population to a c
         for (int i = 0; i < data.length; i++) {

src/eva2/server/go/operators/cluster/ClusteringXMeans.java

@@ -246,7 +246,7 @@ public class ClusteringXMeans implements InterfaceClustering, java.io.Serializab
     /** This mehtod allows you to cluster a population using m_C
      * @param pop   The population
      * @param c     The centroids
-     * @return The clusters as populaitons
+     * @return The clusters as populations
      */
     public Population[] cluster(Population pop, double[][] c) {
         Population[]    result  = new Population[c.length];

src/eva2/server/go/operators/cluster/InterfaceClustering.java

@@ -22,10 +22,14 @@ public interface InterfaceClustering {
      */
     public Object clone();
 
-    /** This method allows you to search for clusters in a given population. The method
+    /** 
+     * This method allows you to search for clusters in a given population. The method
      * returns Number of populations. The first population contains all individuals that
      * could not be associated with any cluster and may be empty.
      * All other populations group individuals into clusters.
+     * It should make sure that the returned Population instances are of the same type
+     * as the given one, which may be a subclass of Population.
+     * 
      * @param pop       The population of individuals that is to be clustered.
      * @return Population[]
      */

src/eva2/server/go/operators/crossover/CrossoverEAMixer.java

@@ -55,31 +55,6 @@ public class CrossoverEAMixer implements InterfaceCrossover, java.io.Serializabl
         this.m_Tau1             = mutator.m_Tau1;
         this.m_LowerLimitChance = mutator.m_LowerLimitChance;
     }
-//
-//    private Vector getClassesFromProperties(String mySelf, String myInterface) {
-//        Vector classes = new Vector();
-//        String typeOptions = EvAClient.getProperty(myInterface);
-//        if (typeOptions == null) {
-//            System.out.println("Warning: No configuration property found in: "  +EvAClient.EVA_PROPERTY_FILE + " "+"for javaeva.server.oa.go.Operators.Mutation.InterfaceMutation");
-//        } else {
-//            StringTokenizer st = new StringTokenizer(typeOptions, ", ");
-//            while (st.hasMoreTokens()) {
-//                String current = st.nextToken().trim();
-//                if (!current.equalsIgnoreCase(mySelf)) {
-//                    try {
-//                    	Class c = Class.forName(current);
-//                    	classes.addElement(current);
-//                    } catch (Exception ex) {
-//                        System.out.println("Couldn't load class with name: " + current);
-//                        System.out.println("ex:"+ex.getMessage());
-//                        ex.printStackTrace();
-//                    }
-//                }
-//            }
-//        }
-//        return classes;
-//    }
-
 
     /** This method will enable you to clone a given mutation operator
      * @return The clone

src/eva2/server/go/operators/crossover/CrossoverESPCX.java

@@ -78,7 +78,7 @@ public class CrossoverESPCX implements InterfaceCrossover, java.io.Serializable
 
                 subSpace = this.getCoordinates(g, i, parents);
 
-//                Plot plot = new javaeva.gui.Plot("SBX Test", "x", "y", true);
+//                Plot plot = new eva2.gui.Plot("SBX Test", "x", "y", true);
 //                plot.setUnconnectedPoint(-2, -2, 0);
 //                plot.setUnconnectedPoint(2, 2, 0);
 //                for (int z = 0; z < parents.length; z++) {
@@ -104,7 +104,7 @@ public class CrossoverESPCX implements InterfaceCrossover, java.io.Serializable
                 for (int j = 1; j < subSpace.size(); j++) {
                     tmpD = (double[])subSpace.get(j);
                     w = RNG.gaussianDouble(this.m_Zeta);
-                    children[i] = Mathematics.vvAdd(children[i], Mathematics.scalarMultVector(w, tmpD));
+                    children[i] = Mathematics.vvAdd(children[i], Mathematics.svMult(w, tmpD));
                 }
             }
 
@@ -122,19 +122,19 @@ public class CrossoverESPCX implements InterfaceCrossover, java.io.Serializable
         double[]    tmpVec, toro;
         double      tmpD;
 
-        tmpVec = Mathematics.subVector(parents[index], mean);
+        tmpVec = Mathematics.vvSub(parents[index], mean);
         result.add(tmpVec);
 
         for (int i = 0; i < parents.length; i++) {
             if (i != index) {
-                tmpVec = Mathematics.subVector(parents[i], mean);
+                tmpVec = Mathematics.vvSub(parents[i], mean);
                 if (this.isValidVec(tmpVec)) {
                     // apply the infamous Gram-Schmidt
                     for (int j = 0; j < result.size(); j++) {
                         toro = (double[]) result.get(j);
                         tmpD = Mathematics.vvMult(toro, tmpVec)/Mathematics.vvMult(toro, toro);
-                        toro = Mathematics.scalarMultVector(tmpD, toro);
-                        tmpVec = Mathematics.subVector(tmpVec, toro);
+                        toro = Mathematics.svMult(tmpD, toro);
+                        tmpVec = Mathematics.vvSub(tmpVec, toro);
                     }
                     if (this.isValidVec(tmpVec)) result.add(tmpVec);
                 }
@@ -145,15 +145,15 @@ public class CrossoverESPCX implements InterfaceCrossover, java.io.Serializable
         double tmpMean;
         for (int i = 1; i < result.size(); i++) {
             toro = (double[]) result.get(i);
-            toro = Mathematics.getNormalizedVector(toro);
+            Mathematics.normVect(toro, toro);
             tmpMean = 0;
             for (int j = 0; j < parents.length; j++) {
                 if (j != index) {
-                    tmpMean += Math.abs(Mathematics.vvMult(toro, Mathematics.subVector(parents[j], mean)));
+                    tmpMean += Math.abs(Mathematics.vvMult(toro, Mathematics.vvSub(parents[j], mean)));
                 }
             }
             tmpMean = tmpMean/((double)(result.size()-1));
-            toro = Mathematics.scalarMultVector(tmpMean, toro);
+            toro = Mathematics.svMult(tmpMean, toro);
             result.set(i, toro);
         }
 

src/eva2/server/go/operators/crossover/CrossoverESSPX.java

@@ -72,18 +72,18 @@ public class CrossoverESSPX implements InterfaceCrossover, java.io.Serializable
 
             // calculate the Y vectors
             for (int i = 0; i < parents.length; i++) {
-                Y[i] = Mathematics.vvAdd(g, Mathematics.scalarMultVector(this.m_Epsilon, Mathematics.subVector(parents[i], g)));
+                Y[i] = Mathematics.vvAdd(g, Mathematics.svMult(this.m_Epsilon, Mathematics.vvSub(parents[i], g)));
             }
 
             // now for each child the C vectors and the result
             for (int i = 0; i < children.length; i++) {
                 C = new double[Y.length][];
-                C[0] = Mathematics.nullVector(parents[0].length);
+                C[0] = Mathematics.zeroes(parents[0].length);
                 for (int j = 1; j < Y.length; j++) {
                     r       = Math.pow(RNG.randomDouble(0, 1), 1/((double)j));
                     C[j]    = Mathematics.vvAdd(Y[j-1], C[j-1]);
-                    C[j]    = Mathematics.subVector(C[j], Y[j]);
-                    C[j]    = Mathematics.scalarMultVector(r, C[j]);
+                    C[j]    = Mathematics.vvSub(C[j], Y[j]);
+                    C[j]    = Mathematics.svMult(r, C[j]);
                     //C[j]    = this.scalarMultVector(r, this.subVector(Y[j-1], this.addVector(Y[j], C[j-1])));
                 }
                 // now the children results from

src/eva2/server/go/operators/crossover/CrossoverESUNDX.java

@@ -85,13 +85,13 @@ public class CrossoverESUNDX implements InterfaceCrossover, java.io.Serializable
                 for (int j = 0; j < givenCoordinates.size(); j++) {
                     tmpD = (double[])givenCoordinates.get(j);
                     w = RNG.gaussianDouble(this.m_Zeta);
-                    children[i] = Mathematics.vvAdd(children[i], Mathematics.scalarMultVector(w, tmpD));
+                    children[i] = Mathematics.vvAdd(children[i], Mathematics.svMult(w, tmpD));
                 }
                 // now the missing stuff
                 for (int j = 0; j < missingCorrdinates.size(); j++) {
                     tmpD = (double[])missingCorrdinates.get(j);
                     w = RNG.gaussianDouble(this.m_Eta);
-                    children[i] = Mathematics.vvAdd(children[i], Mathematics.scalarMultVector(w, tmpD));
+                    children[i] = Mathematics.vvAdd(children[i], Mathematics.svMult(w, tmpD));
                 }
             }
 
@@ -110,7 +110,7 @@ public class CrossoverESUNDX implements InterfaceCrossover, java.io.Serializable
         double      tmpD;
 
         for (int i = 0; i < parents.length; i++) {
-            tmpVec = Mathematics.subVector(parents[i], mean);
+            tmpVec = Mathematics.vvSub(parents[i], mean);
             if (Mathematics.isValidVec(tmpVec)) {
                 if (result.size() == 0) {
                     result.add(tmpVec);
@@ -119,8 +119,8 @@ public class CrossoverESUNDX implements InterfaceCrossover, java.io.Serializable
                     for (int j = 0; j < result.size(); j++) {
                         toro = (double[]) result.get(j);
                         tmpD = Mathematics.vvMult(toro, tmpVec)/Mathematics.vvMult(toro, toro);
-                        toro = Mathematics.scalarMultVector(tmpD, toro);
-                        tmpVec = Mathematics.subVector(tmpVec, toro);
+                        toro = Mathematics.svMult(tmpD, toro);
+                        tmpVec = Mathematics.vvSub(tmpVec, toro);
                     }
                     if (Mathematics.isValidVec(tmpVec)) result.add(tmpVec);
                 }
@@ -145,12 +145,12 @@ public class CrossoverESUNDX implements InterfaceCrossover, java.io.Serializable
                 for (int j = 0; j < completeList.size(); j++) {
                     toro = (double[]) completeList.get(j);
                     tmpD = Mathematics.vvMult(toro, tmpVec)/Mathematics.vvMult(toro, toro);
-                    toro = Mathematics.scalarMultVector(tmpD, toro);
-                    tmpVec = Mathematics.subVector(tmpVec, toro);
+                    toro = Mathematics.svMult(tmpD, toro);
+                    tmpVec = Mathematics.vvSub(tmpVec, toro);
                 }
                 if (Mathematics.isValidVec(tmpVec)) {
-                    tmpVec = Mathematics.getNormalizedVector(tmpVec);
-                    tmpVec = Mathematics.scalarMultVector(Mathematics.vvMult(theOther, tmpVec), tmpVec);
+                    Mathematics.normVect(tmpVec, tmpVec);
+                    tmpVec = Mathematics.svMult(Mathematics.vvMult(theOther, tmpVec), tmpVec);
                     result.add(tmpVec);
                     completeList.add(tmpVec);
                 }

src/eva2/server/go/operators/crossover/CrossoverOBGAPMX.java

@@ -9,7 +9,7 @@ import eva2.server.go.problems.InterfaceOptimizationProblem;
 import wsi.ra.math.RNG;
 
 /**
- * <p>Title: The JavaEvA</p>
+ * <p>Title: EvA2</p>
  * <p>Description: PMX-Crossover as defined in http://www.cs.rit.edu/usr/local/pub/pga/Genetic/Slides_etc/ga_5_og.pdf</p>
  * <p>Copyright: Copyright (c) 2003</p>
  * <p>Company: </p>

src/eva2/server/go/operators/crossover/CrossoverOBGAPMXUniform.java

@@ -8,7 +8,7 @@ import eva2.server.go.problems.InterfaceOptimizationProblem;
 import wsi.ra.math.RNG;
 
 /**
- * <p>Title: The JavaEvA</p>
+ * <p>Title: EvA2</p>
  * <p>Description: PMX-Crossover as defined in http://www.cs.rit.edu/usr/local/pub/pga/Genetic/Slides_etc/ga_5_og.pdf</p>
  * <p>Copyright: Copyright (c) 2003</p>
  * <p>Company: </p>

src/eva2/server/go/operators/migration/MOClusteringSeparation.java

@@ -106,7 +106,7 @@ public class MOClusteringSeparation implements InterfaceMigration, java.io.Seria
 //            double[]    tmpD = new double[2];
 //            tmpD[0] = 0;
 //            tmpD[1] = 0;
-//            plot = new javaeva.gui.Plot("Debugging Clustering Separation", "Y1", "Y2", tmpD, tmpD);
+//            plot = new eva2.gui.Plot("Debugging Clustering Separation", "Y1", "Y2", tmpD, tmpD);
 //            GraphPointSet           mySet;
 //            DPoint                  myPoint;
 //            Chart2DDPointIconText   tmp;

src/eva2/server/go/operators/migration/MOConeSeparation.java

@@ -137,7 +137,7 @@ public class MOConeSeparation implements InterfaceMigration, java.io.Serializabl
 //            double[]    tmpD = new double[2];
 //            tmpD[0] = 0;
 //            tmpD[1] = 0;
-//            plot = new javaeva.gui.Plot("Debugging Cone Separation", "Y1", "Y2", tmpD, tmpD);
+//            plot = new eva2.gui.Plot("Debugging Cone Separation", "Y1", "Y2", tmpD, tmpD);
 //            GraphPointSet           mySet;
 //            DPoint                  myPoint;
 //            Chart2DDPointIconText   tmp;

src/eva2/server/go/operators/migration/MOXMeansSeparation.java

@@ -101,7 +101,7 @@ public class MOXMeansSeparation implements InterfaceMigration, java.io.Serializa
 //            double[]    tmpD = new double[2];
 //            tmpD[0] = 0;
 //            tmpD[1] = 0;
-//            plot = new javaeva.gui.Plot("Debugging Clustering Separation", "Y1", "Y2", tmpD, tmpD);
+//            plot = new eva2.gui.Plot("Debugging Clustering Separation", "Y1", "Y2", tmpD, tmpD);
 //            GraphPointSet           mySet;
 //            DPoint                  myPoint;
 //            Chart2DDPointIconText   tmp;

src/eva2/server/go/operators/moso/MOSOMaxiMin.java

@@ -73,7 +73,7 @@ public class MOSOMaxiMin implements InterfaceMOSOConverter, java.io.Serializable
         }
         ////////////////////////////////////////////////////////////////////////////////////
 //        if (false) {
-//            this.m_Plot = new javaeva.gui.Plot("Debug MaxiMin", "Y1", "Y2");
+//            this.m_Plot = new eva2.gui.Plot("Debug MaxiMin", "Y1", "Y2");
 //            this.m_Plot.setUnconnectedPoint(0, 0, 11);
 //            this.m_Plot.setUnconnectedPoint(1.2, 2.0, 11);
 //            double[][] trueFitness, moFitness;

src/eva2/server/go/operators/moso/MOSOUtilityFunction.java

@@ -14,10 +14,8 @@ import eva2.server.go.populations.Population;
 public class MOSOUtilityFunction implements InterfaceMOSOConverter, java.io.Serializable {
 
     private int                 m_OutputDimension = 2;
-    //private Source              m_Source = new Source ("\\src\\javaeva\\server\\oa\\go\\Operators\\MOSOConverter\\MOSOUtilityFunction.java");
 
     public MOSOUtilityFunction () {
-//        m_Source = new Source ("\\src\\javaeva\\server\\oa\\go\\Operators\\MOSOConverter\\MOSOUtilityFunction.java");
     }
     public MOSOUtilityFunction(MOSOUtilityFunction b) {
         System.out.println("Warning no source!");

src/eva2/server/go/operators/mutation/MutateEAMixer.java

@@ -55,31 +55,6 @@ public class MutateEAMixer implements InterfaceMutation, java.io.Serializable  {
         this.m_Tau1             = mutator.m_Tau1;
         this.m_LowerLimitChance = mutator.m_LowerLimitChance;
     }
-//
-//    private Vector getClassesFromProperties(String mySelf, String myInterface) {
-//        Vector classes = new Vector();
-//        String typeOptions = EvAClient.getProperty(myInterface);
-//        if (typeOptions == null) {
-//            System.out.println("Warning: No configuration property found in: "  +EvAClient.EVA_PROPERTY_FILE + " "+"for javaeva.server.oa.go.Operators.Mutation.InterfaceMutation");
-//        } else {
-//            StringTokenizer st = new StringTokenizer(typeOptions, ", ");
-//            while (st.hasMoreTokens()) {
-//                String current = st.nextToken().trim();
-//                if (!current.equalsIgnoreCase(mySelf)) {
-//                    try {
-//                    	Class c = Class.forName(current);
-//                    	classes.addElement(current);
-//                    } catch (Exception ex) {
-//                        System.out.println("Couldn't load class with name: " + current);
-//                        System.out.println("ex:"+ex.getMessage());
-//                        ex.printStackTrace();
-//                    }
-//                }
-//            }
-//        }
-//        return classes;
-//    }
-
 
     /** This method will enable you to clone a given mutation operator
      * @return The clone

src/eva2/server/go/operators/mutation/MutateESDefault.java

@@ -80,6 +80,6 @@ public class MutateESDefault implements InterfaceMutation, java.io.Serializable
      * @return description
      */
     public String globalInfo() {
-        return "The default mutation alters one element of the double attributes.";
+        return "The default mutation just uses the default method implemented in the individual.";
     }
 }

src/eva2/server/go/operators/mutation/MutateESStandard.java

@@ -15,7 +15,7 @@ import wsi.ra.math.RNG;
  * To change this template use Options | File Templates.
  */
 public class MutateESStandard implements InterfaceMutation, java.io.Serializable  {
-    private double      m_MutationStepSize = 0.1;
+    protected double      m_MutationStepSize = 0.1;
 
     public MutateESStandard() {
     }
@@ -102,13 +102,14 @@ public class MutateESStandard implements InterfaceMutation, java.io.Serializable
      * @return description
      */
     public String globalInfo() {
-        return "The standart mutation alters all elements of the double attributes with a fixed mutation step size.";
+        return "The standard mutation alters all elements of the double attributes with a fixed mutation step size.";
     }
 
     /** This method allows you to set the fixed mutation step size
      * @param step    The new mutation step size
      */
     public void setMutationStepSize(double step) {
+        if (step < 0) step = 0.0000001;
         this.m_MutationStepSize = step;
     }
     public double getMutationStepSize() {

src/eva2/server/go/operators/mutation/MutateESSuccessRule.java

@@ -7,24 +7,25 @@ import eva2.server.go.problems.InterfaceOptimizationProblem;
 import wsi.ra.math.RNG;
 
 /**
- * Created by IntelliJ IDEA.
+ * Success rule implementation.
+ * 
  * User: streiche
  * Date: 10.05.2005
  * Time: 14:11:49
  * To change this template use File | Settings | File Templates.
  */
-public class MutateESSuccessRule implements InterfaceMutation, java.io.Serializable {
-
+public class MutateESSuccessRule extends MutateESStandard implements InterfaceMutation, java.io.Serializable {
+/*
+ * This is a bit of a cheat as the implementation does only hold some
+ * more parameters while the ES strategy really acts on it.
+ */
     // it would be quite nice to make this variable static, but in that case
     // no one could runs n independent ES runs in parallel anymore *sigh*
     // protected static double m_MutationStepSize    = 0.2;
-    protected double        m_MutationStepSize    = 0.2;
+//    protected double        m_MutationStepSize    = 0.2; // now in base class
     protected double        m_SuccessRate         = 0.2;
     protected double        m_Alpha               = 1.2;
 
-    public MutateESSuccessRule() {
-
-    }
     public MutateESSuccessRule(MutateESSuccessRule mutator) {
         this.m_MutationStepSize     = mutator.m_MutationStepSize;
         this.m_SuccessRate          = mutator.m_SuccessRate;
@@ -38,7 +39,7 @@ public class MutateESSuccessRule implements InterfaceMutation, java.io.Serializa
         return new MutateESSuccessRule(this);
     }
 
-    /** This method allows you to evaluate wether two mutation operators
+    /** This method allows you to evaluate whether two mutation operators
      * are actually the same.
      * @param mutator   The other mutation operator
      */
@@ -51,44 +52,6 @@ public class MutateESSuccessRule implements InterfaceMutation, java.io.Serializa
             return true;
         } else return false;
     }
-
-    /** This method allows you to init the mutation operator
-     * @param individual      The individual that will be mutated.
-     * @param opt               The optimization problem.
-     */
-    public void init(AbstractEAIndividual individual, InterfaceOptimizationProblem opt) {
-
-    }
-
-    /** This method will mutate a given AbstractEAIndividual. If the individual
-     * doesn't implement InterfaceGAIndividual nothing happens.
-     * @param individual    The individual that is to be mutated
-     */
-    public void mutate(AbstractEAIndividual individual) {
-        //System.out.println("Before Mutate: " +((GAIndividual)individual).getSolutionRepresentationFor());
-        if (individual instanceof InterfaceESIndividual) {
-            double[] x = ((InterfaceESIndividual)individual).getDGenotype();
-            double[][] range = ((InterfaceESIndividual)individual).getDoubleRange();
-            for (int i = 0; i < x.length; i++) {
-                x[i] += ((range[i][1] -range[i][0])/2)*RNG.gaussianDouble(this.m_MutationStepSize);
-                if (range[i][0] > x[i]) x[i] = range[i][0];
-                if (range[i][1] < x[i]) x[i] = range[i][1];
-            }
-            ((InterfaceESIndividual)individual).SetDGenotype(x);
-
-        }
-        //System.out.println("After Mutate:  " +((GAIndividual)individual).getSolutionRepresentationFor());
-    }
-
-    /** This method allows you to perform either crossover on the strategy parameters
-     * or to deal in some other way with the crossover event.
-     * @param indy1     The original mother
-     * @param partners  The original partners
-     */
-    public void crossoverOnStrategyParameters(AbstractEAIndividual indy1, Population partners) {
-        // nothing to do here
-    }
-
     /** This method allows you to get a string representation of the mutation
      * operator
      * @return A descriptive string.
@@ -122,20 +85,10 @@ public class MutateESSuccessRule implements InterfaceMutation, java.io.Serializa
      * @return description
      */
     public String globalInfo() {
-        return "The 1/5 success rule is something special and works only together with an ES optimizer.";
+        return "The 1/5 success rule works only together with an ES optimizer.";
     }
 
-    /** Set the initial mutation step size with this method.
-     * @param d   The mutation operator.
-     */
-    public void setInitialMutationStepSize(double d) {
-        if (d < 0) d = 0.0000001;
-        this.m_MutationStepSize = d;
-    }
-    public double getInitialMutationStepSize() {
-        return this.m_MutationStepSize;
-    }
-    public String initialMutationStepSizeTipText() {
+    public String mutationStepSizeTipText() {
         return "Choose the initial mutation step size.";
     }
 

src/eva2/server/go/operators/mutation/MutateOBGAFlip.java

@@ -9,7 +9,7 @@ import wsi.ra.math.RNG;
 
 
 /**
- * <p>Title: The JavaEvA</p>
+ * <p>Title: EvA2</p>
  *
  * <p>Description: </p>
  *

src/eva2/server/go/operators/mutation/MutateOBGAInversion.java

@@ -9,7 +9,7 @@ import wsi.ra.math.RNG;
 
 
 /**
- * <p>Title: The JavaEvA</p>
+ * <p>Title: EvA2</p>
  * <p>Description: </p>
  * <p>Copyright: Copyright (c) 2003</p>
  * <p>Company: </p>

src/eva2/server/go/operators/selection/probability/AbstractSelProb.java

@@ -23,7 +23,7 @@ public abstract class AbstractSelProb implements InterfaceSelectionProbability,
     public abstract Object clone();
 
     /** This method computes the selection probability for each individual
-     * in the population. Note: Summed over the complete populaiton the selection
+     * in the population. Note: Summed over the complete population the selection
      *  probability sums up to one.
      * @param population    The population to compute.
      * @param input         The name of the input.
@@ -33,7 +33,7 @@ public abstract class AbstractSelProb implements InterfaceSelectionProbability,
     }
 
     /** This method computes the selection probability for each individual
-     * in the population. Note: Summed over the complete populaiton the selection
+     * in the population. Note: Summed over the complete population the selection
      *  probability sums up to one.
      * @param population    The population to compute.
      * @param input         The name of the input.

src/eva2/server/go/operators/selection/probability/InterfaceSelectionProbability.java

@@ -21,7 +21,7 @@ public interface InterfaceSelectionProbability {
     public Object clone();
 
     /** This method computes the selection probability for each individual
-     *  in the population. Note: Summed over the complete populaiton the selection
+     *  in the population. Note: Summed over the complete population the selection
      *  probability sums up to one.
      * @param population    The population to compute.
      * @param input         The name of the input.
@@ -29,7 +29,7 @@ public interface InterfaceSelectionProbability {
     public void computeSelectionProbability(Population population, String[] input, boolean obeyConst);
 
     /** This method computes the selection probability for each individual
-     *  in the population. Note: Summed over the complete populaiton the selection
+     *  in the population. Note: Summed over the complete population the selection
      *  probability sums up to one.
      * @param population    The population to compute.
      * @param input         The name of the input.
@@ -37,7 +37,7 @@ public interface InterfaceSelectionProbability {
     public void computeSelectionProbability(Population population, String input, boolean obeyConst);
 
     /** This method computes the selection probability for each individual
-     *  in the population. Note: Summed over the complete populaiton the selection
+     *  in the population. Note: Summed over the complete population the selection
      *  probability sums up to one.
      * @param population    The population to compute.
      * @param data         The input data as double[][].

src/eva2/server/go/operators/selection/probability/SelProbBoltzman.java

@@ -32,7 +32,7 @@ public class SelProbBoltzman extends AbstractSelProb implements java.io.Serializ
     }
 
     /** This method computes the selection probability for each individual
-     * in the population. Note: Summed over the complete populaiton the selection
+     * in the population. Note: Summed over the complete population the selection
      *  probability sums up to one.
      * @param population    The population to compute.
      * @param data         The input data as double[][].

src/eva2/server/go/operators/selection/probability/SelProbFitnessSharing.java

@@ -36,7 +36,7 @@ public class SelProbFitnessSharing extends AbstractSelProb implements java.io.Se
     }
 
     /** This method computes the selection probability for each individual
-     *  in the population. Note: Summed over the complete populaiton the selection
+     *  in the population. Note: Summed over the complete population the selection
      *  probability sums up to one. Keep in mind that fitness is always to be
      *  minimizied! Small values for data => big values for selectionprob.
      * @param population    The population to compute.

src/eva2/server/go/operators/selection/probability/SelProbInvertByMax.java

@@ -33,7 +33,7 @@ public class SelProbInvertByMax extends AbstractSelProb {
 	}
 
 	/** This method computes the selection probability for each individual
-	 * in the population. Note: Summed over the complete populaiton the selection
+	 * in the population. Note: Summed over the complete population the selection
 	 *  probability sums up to one.
 	 * @param population    The population to compute.
 	 * @param data         The input data as double[][].

src/eva2/server/go/operators/selection/probability/SelProbLinearRanking.java

@@ -28,7 +28,7 @@ public class SelProbLinearRanking extends AbstractSelProb implements java.io.Ser
     }
 
     /** This method computes the selection probability for each individual
-     * in the population. Note: Summed over the complete populaiton the selection
+     * in the population. Note: Summed over the complete population the selection
      *  probability sums up to one.
      * @param population    The population to compute.
      * @param data          The input as double[][]

src/eva2/server/go/operators/selection/probability/SelProbNonLinearRanking.java

@@ -27,7 +27,7 @@ public class SelProbNonLinearRanking extends AbstractSelProb implements java.io.
     }
 
     /** This method computes the selection probability for each individual
-     * in the population. Note: Summed over the complete populaiton the selection
+     * in the population. Note: Summed over the complete population the selection
      *  probability sums up to one.
      * @param population    The population to compute.
      * @param data          The input as double[][]

src/eva2/server/go/operators/selection/probability/SelProbRanking.java

@@ -24,7 +24,7 @@ public class SelProbRanking extends AbstractSelProb implements java.io.Serializa
     }
 
     /** This method computes the selection probability for each individual
-     * in the population. Note: Summed over the complete populaiton the selection
+     * in the population. Note: Summed over the complete population the selection
      *  probability sums up to one.
      * @param population    The population to compute.
      * @param data          The input as double[][]

src/eva2/server/go/operators/selection/probability/SelProbStandardScaling.java

@@ -30,7 +30,7 @@ public class SelProbStandardScaling extends AbstractSelProb implements java.io.S
     }
 
     /** This method computes the selection probability for each individual
-     * in the population. Note: Summed over the complete populaiton the selection
+     * in the population. Note: Summed over the complete population the selection
      *  probability sums up to one.
      * @param population    The population to compute.
      * @param data         The input data as double[][].