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Matlab interface now uses true binary data type for binary problems

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This commit is contained in:
Marcel Kronfeld 2011-01-21 08:32:31 +00:00
parent e8c14b0aa8
commit a207014610
5 changed files with 70 additions and 21 deletions
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23
resources/MatlabInterface/@JEInterface/convertUnsignedJE.m
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@ -2,13 +2,24 @@ function [ z ] = convertUnsignedJE( int, x )
%CONVERTUNSIGNEDJE Convert signed 32-bit integer to unsigned.
% Detailed explanation goes here
z=zeros(size(x,1),size(x,2), 'uint32');
for j=1 : size(x,1)
for i=1 : size(x,2)
if (x(j,i) < 0)
z(j,i) = 1+bitxor(uint32(-x(j,i)), int.hexMask);
if strcmp(class(x),'java.util.BitSet')
z=num2str(10^(int.dim-1));
for i=1:int.dim
if (x.get(i-1)) % Java indices start at zero!
z(i)='1';
else
z(j,i) = x(j,i);
z(i)='0';
end
end
else
z=zeros(size(x,1),size(x,2), 'int32');
for j=1 : size(x,1)
for i=1 : size(x,2)
if (x(j,i) < 0)
z(j,i) = 1+bitxor(uint32(-x(j,i)), int.hexMask);
else
z(j,i) = x(j,i);
end
end
end
end

2
resources/MatlabInterface/@JEInterface/runEvalLoopJE.m
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@ -78,7 +78,7 @@ try
% disp(sprintf('running mediator id %d',cnt));
int.mediator.run(cnt);
% disp(sprintf('after running mediator id %d',cnt));
cnt=cnt+1;
cnt=cnt+1;
if (~int.mediator.isFinished())
% disp('getting question');
x = int.mediator.getQuestion();

15
resources/MatlabInterface/@JEInterface/testEvalFunc.m
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@ -6,11 +6,13 @@ if (isempty(int.range))
% binary problem
s=sprintf('Binary problem of bitwidth %d', int.dim);
disp(s);
numInts=ceil(int.dim/wordwidth);
%numInts=ceil(int.dim/wordwidth);
% generate trial vector
x=ceil(rand(1,numInts).*(2^wordwidth));
overheadBits=numInts*wordwidth-int.dim;
x(numInts)=bitshift(x(numInts),-overheadBits); % shift right by overhead
%x=ceil(rand(1,numInts).*(2^wordwidth));
%overheadBits=numInts*wordwidth-int.dim;
%x(numInts)=bitshift(x(numInts),-overheadBits); % shift right by overhead
bs=eva2.tools.math.RNG.randomBitSet(0.5, int.dim);
x=convertUnsignedJE(int, bs);
else
% double problem
x=rand(1, int.dim);
@ -35,9 +37,10 @@ try
res = feval(int.f, x, int.args);
end
catch ME
disp('Function evaluation failed:');
disp('JEInterface: Test function evaluation failed:');
disp(ME.message);
error(['Test failed! ' ME.message]);
rethrow(ME);
%error(['Test failed! ' ME.message]);
end
disp('Function returned: ');

4
src/eva2/server/go/problems/MatlabEvalMediator.java
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@ -1,5 +1,7 @@
package eva2.server.go.problems;
import java.util.BitSet;
import eva2.gui.BeanInspector;
/**
@ -240,7 +242,7 @@ public class MatlabEvalMediator {
optSolSet = solSet;
}
void setSolutionSet(int[][] solSet) {
void setSolutionSet(BitSet[] solSet) {
// System.err.println("setting SolSet " + ((solSet != null) ? solSet.length : 0));
optSolSet = solSet;
}

47
src/eva2/server/go/problems/MatlabProblem.java
View File

@ -5,15 +5,17 @@ import java.io.FileOutputStream;
import java.io.PrintStream;
import java.io.Serializable;
import java.util.Arrays;
import java.util.BitSet;
import eva2.OptimizerFactory;
import eva2.OptimizerRunnable;
import eva2.gui.BeanInspector;
import eva2.server.go.PopulationInterface;
import eva2.server.go.individuals.AbstractEAIndividual;
import eva2.server.go.individuals.ESIndividualDoubleData;
import eva2.server.go.individuals.GAIndividualIntegerData;
import eva2.server.go.individuals.GAIndividualBinaryData;
import eva2.server.go.individuals.InterfaceDataTypeBinary;
import eva2.server.go.individuals.InterfaceDataTypeDouble;
import eva2.server.go.individuals.InterfaceDataTypeInteger;
import eva2.server.go.operators.postprocess.InterfacePostProcessParams;
import eva2.server.go.operators.postprocess.PostProcess;
import eva2.server.go.operators.postprocess.PostProcessParams;
@ -25,6 +27,7 @@ import eva2.server.go.operators.terminators.PopulationMeasureTerminator.Stagnati
import eva2.server.go.populations.Population;
import eva2.server.go.strategies.InterfaceOptimizer;
import eva2.server.stat.InterfaceTextListener;
import eva2.tools.ToolBox;
/**
* Interface problem class for Matlab(TM). Towards EvA2 this behaves like any other double valued
@ -105,13 +108,18 @@ public class MatlabProblem extends AbstractOptimizationProblem implements Interf
((InterfaceDataTypeDouble)this.m_Template).SetDoubleRange(range);
}
} else {
if (m_Template == null) m_Template = new GAIndividualIntegerData();
///// binary alternative
if (m_Template == null) m_Template = new GAIndividualBinaryData(getProblemDimension());
///// Integer alternative
/*if (m_Template == null) m_Template = new GAIndividualIntegerData();
int intLen = 1+((getProblemDimension()-1)/32);
int lastIntCodingBits = getProblemDimension()-((intLen-1)*32);
if (lastIntCodingBits > 32) System.err.println("ERROR in MatlabProblem:initTemplate");
((GAIndividualIntegerData)m_Template).setIntegerDataLength(intLen);
((GAIndividualIntegerData)m_Template).SetIntRange(Integer.MIN_VALUE, Integer.MAX_VALUE);
if (lastIntCodingBits < 32) ((GAIndividualIntegerData)m_Template).SetIntRange(intLen-1, 0, (int)Math.pow(2, lastIntCodingBits)-1);
*/ /////
// System.err.println("integer length is "+((GAIndividualIntegerData)m_Template).getIntegerData().length);
// System.err.println("Range is " + BeanInspector.toString(((GAIndividualIntegerData)m_Template).getIntRange()));
// m_Template = new GAIndividualBinaryData();
@ -266,6 +274,17 @@ public class MatlabProblem extends AbstractOptimizationProblem implements Interf
optimize(optType, outputFilePrefix, null, null);
}
/**
* Start an optimization using the MatlabProblem. The optType references the standard
* optimizer as in OptimizerFactory. An output file prefix is optional. In two arrays,
* name-value mappings can be given as additional parameters to the optimizer.
*
* @see OptimizerFactory.getOptRunnable
* @param optType
* @param outputFilePrefix
* @param specParams
* @param specValues
*/
public void optimize(final int optType, String outputFilePrefix, Object[] specParams, Object[] specValues) {
if (allowSingleRunnable && (runnable != null) && (!runnable.isFinished())) {
System.err.println("Please wait for the current optimization to finish");
@ -399,21 +418,21 @@ public class MatlabProblem extends AbstractOptimizationProblem implements Interf
}
handler.setSolutionSet(solSet);
} else {
int[][] solSet = new int[pop.size()][];
BitSet[] solSet = new BitSet[pop.size()];
for (int i=0; i<pop.size(); i++) {
solSet[i]=((InterfaceDataTypeInteger)pop.getEAIndividual(i)).getIntegerData();
solSet[i]=((InterfaceDataTypeBinary)pop.getEAIndividual(i)).getBinaryData();
}
handler.setSolutionSet(solSet);
}
} else {
if (isDouble) handler.setSolutionSet((double[][])null);
else handler.setSolutionSet((int[][])null);
else handler.setSolutionSet((BitSet[])null);
}
}
void exportResultToMatlab(OptimizerRunnable runnable) {
if (isDouble) handler.setSolution(runnable.getDoubleSolution());
else handler.setSolution(runnable.getIntegerSolution());
else handler.setSolution(runnable.getBinarySolution());
}
// void exportResultToMatlab(double[] result) {
@ -504,4 +523,18 @@ public class MatlabProblem extends AbstractOptimizationProblem implements Interf
log("retrieving initial range..., first entry: " + ((initialRange==null) ? "null" : BeanInspector.toString(initialRange[0])));
return initialRange;
}
@Override
public String[] getAdditionalDataHeader() {
return ToolBox.appendArrays(super.getAdditionalDataHeader(), "matlabSol");
}
@Override
public String[] getAdditionalDataInfo() {
return ToolBox.appendArrays(super.getAdditionalDataInfo(), "Additional solution representation");
}
@Override
public Object[] getAdditionalDataValue(PopulationInterface pop) {
String addStr=((AbstractEAIndividual)pop.getBestIndividual()).getStringRepresentation();
return ToolBox.appendArrays(super.getAdditionalDataValue(pop), addStr);
}
}