7605dacb8a 
					 
					
						
						
							
							CLI adjustments  
						
						
						
						
					 
					
						2014-11-06 15:54:57 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						3358a469a3 
					 
					
						
						
							
							Fix bug in PSO implementation.  
						
						
						
						
					 
					
						2014-11-06 11:27:32 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						b7749711ca 
					 
					
						
						
							
							Remove last uses of SelectedTag from core package  
						
						... 
						
						
						
						refs #32  
						
						
					 
					
						2014-11-06 10:25:51 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						1b8b77c52f 
					 
					
						
						
							
							Remove SelectedTag in StatisticsParameters  
						
						... 
						
						
						
						refs #32  
						
						
					 
					
						2014-11-05 22:31:28 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						93aff6d876 
					 
					
						
						
							
							Refactor EnumEditor and actually use it.  
						
						... 
						
						
						
						refs #32  
						
						
					 
					
						2014-11-05 20:00:00 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						62e436274c 
					 
					
						
						
							
							Removed SelectedTag from ScatterSearch.  
						
						... 
						
						
						
						refs #32  
						
						
					 
					
						2014-11-05 19:02:39 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						e18f9e3b38 
					 
					
						
						
							
							Replace SelectedTag with useful enum.  
						
						... 
						
						
						
						refs #32  
						
						
					 
					
						2014-11-05 18:53:47 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						a91d9fbecc 
					 
					
						
						
							
							Close dialogs on escape key press.  
						
						
						
						
					 
					
						2014-11-05 18:53:23 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						a3cf5971fb 
					 
					
						
						
							
							Remove AlgType Selected in PSO  
						
						... 
						
						
						
						refs #32  
						
						
					 
					
						2014-11-04 23:20:15 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						43768d1f96 
					 
					
						
						
							
							Removes SelectedType where unnecessary.  
						
						... 
						
						
						
						refs #32 
- Replaced SelectedType with an enum in CombinedTerminator 
						
						
					 
					
						2014-11-04 22:54:13 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						cb89110e86 
					 
					
						
						
							
							Style adjustments for MacOS  
						
						
						
						
					 
					
						2014-11-04 21:44:24 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						efe1a1188b 
					 
					
						
						
							
							Stuff.  
						
						
						
						
					 
					
						2014-11-04 16:33:55 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						b77cda3046 
					 
					
						
						
							
							Cleaner code.  
						
						
						
						
					 
					
						2014-11-04 15:18:26 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						049304e9c1 
					 
					
						
						
							
							Removed unused classes (dating back to < 2007..)  
						
						
						
						
					 
					
						2014-11-03 18:50:35 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						a08655a60f 
					 
					
						
						
							
							Add load/store to configurations.  
						
						... 
						
						
						
						refs #31  
						
						
					 
					
						2014-11-03 16:26:01 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						70dd824d13 
					 
					
						
						
							
							Remove globalInfo completely  
						
						... 
						
						
						
						closes  #9 
- Remove all remaining globalInfo methods.
- Remove globalInfo handling.
- WIN. 
					
						2014-11-02 19:04:17 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						551b14fe3d 
					 
					
						
						
							
							Load and store Optimizations as YAML.  
						
						... 
						
						
						
						refs #31 
- Introduces custom BeanSerializer using SnakeYAML
- Removed previous json package
- Introduces eva2.yaml package
- Hidden properties are not saved
- Reintroduces output in text window 
						
						
					 
					
						2014-11-02 17:53:42 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						173ebd67c6 
					 
					
						
						
							
							Cleanup as well as moving TipText methods to useful @Parameter  
						
						... 
						
						
						
						annotations. 
						
						
					 
					
						2014-11-02 16:10:57 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						6bb4616763 
					 
					
						
						
							
							Added enum handling to CLI mode.  
						
						
						
						
					 
					
						2014-11-02 16:10:44 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						83ee77f5af 
					 
					
						
						
							
							Simplify appendArrays method to use generic type.  
						
						
						
						
					 
					
						2014-11-02 15:33:56 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						ea4b12efab 
					 
					
						
						
							
							Add snakeyaml dependency  
						
						
						
						
					 
					
						2014-11-02 14:53:40 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						8104c9baf7 
					 
					
						
						
							
							Rename more init() methods to initialize()  
						
						
						
						
					 
					
						2014-11-02 14:53:27 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						97d79612c2 
					 
					
						
						
							
							Merge branch '30-dynamic-cli'  
						
						
						
						
					 
					
						2014-11-02 14:03:59 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						edaa58bd5a 
					 
					
						
						
							
							Remove apache, gson, cli, reflection dependencies for slimmer EvA2  
						
						... 
						
						
						
						package. 
						
						
					 
					
						2014-11-02 14:03:23 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						89402e0b05 
					 
					
						
						
							
							Hide several elements from the UI  
						
						
						
						
					 
					
						2014-11-02 13:40:31 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						29a1bb64e3 
					 
					
						
						
							
							Performance Optimization in CLI mode  
						
						... 
						
						
						
						refs #30 
- Abort object building if all params found 
						
						
					 
					
						2014-11-02 13:39:58 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						2a2162c5da 
					 
					
						
						
							
							More @Parameters and a fix for empty getters.  
						
						
						
						
					 
					
						2014-11-01 18:59:28 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						ee73f5dbe5 
					 
					
						
						
							
							Renamed init to initialize.  
						
						... 
						
						
						
						Added @Parameter annotation to EAIndividual 
						
						
					 
					
						2014-11-01 18:32:21 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						9efebe8b4b 
					 
					
						
						
							
							Initial commit of new dynamic CLI mode.  
						
						
						
						
					 
					
						2014-11-01 18:20:58 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						d0268527b0 
					 
					
						
						
							
							Rename InterfaceStatisticsParameter to InterfaceStatisticsParameters for  
						
						... 
						
						
						
						consistentcy with OptimizationParameters 
						
						
					 
					
						2014-11-01 18:18:58 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						d676e78f61 
					 
					
						
						
							
							Few more @Parameter annotations where useful.  
						
						
						
						
					 
					
						2014-11-01 17:57:56 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						cb83280a55 
					 
					
						
						
							
							Properly show TipTexts again  
						
						... 
						
						
						
						refs #29  
						
						
					 
					
						2014-11-01 14:53:28 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						4909cdd6bc 
					 
					
						
						
							
							Refactor @Parameter annotation to be applied to setter methods.  
						
						... 
						
						
						
						fixes  #29 
- Change Parameter annotation to exist on methods
- Add default value to name field to make it optional
- Adjust classes that already use the annotation 
					
						2014-11-01 13:27:33 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						032a4ce087 
					 
					
						
						
							
							Added new convertToUnderscore method.  
						
						
						
						
					 
					
						2014-11-01 13:27:09 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						9a8efc403e 
					 
					
						
						
							
							Move InterfacePopulationChangedEventListener to  
						
						... 
						
						
						
						eva2.optimization.population. 
						
						
					 
					
						2014-10-31 19:05:38 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						c8de290e4c 
					 
					
						
						
							
							Random refactoring to make EvA2Problems work again.  
						
						
						
						
					 
					
						2014-10-31 18:36:15 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						3ac628e85f 
					 
					
						
						
							
							Rename init method to initialize and fix a bug for SBMLsimulator interop  
						
						
						
						
					 
					
						2014-10-31 15:21:13 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						ba814ec492 
					 
					
						
						
							
							Remove hostname from Main  
						
						
						
						
					 
					
						2014-10-31 10:54:51 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						802a36eb60 
					 
					
						
						
							
							Consistently have a white background in propertypanel  
						
						
						
						
					 
					
						2014-10-31 00:34:55 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						4db79c69d2 
					 
					
						
						
							
							Remove a huge chunk of globalInfo methods.  
						
						... 
						
						
						
						refs #9  
						
						
					 
					
						2014-10-31 00:29:22 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						0b35a9e880 
					 
					
						
						
							
							Fixes sidebar issue with content disappearing.  
						
						... 
						
						
						
						fixes  #6 
- Use the correct LayoutManager for the CellRenderer/Editor
- Fixed Button style 
					
						2014-10-30 18:42:16 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						b9e43e1174 
					 
					
						
						
							
							Fix GUI hidden properties (setProblem) in Optimizers  
						
						
						
						
					 
					
						2014-10-30 16:27:35 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						6465afb3e9 
					 
					
						
						
							
							New MaximumTimeTerminator  
						
						... 
						
						
						
						closes  #28 
- Implements new MaximumTimeTerminator
- Bit of cleanup + making some classes final where useful 
					
						2014-10-29 23:10:47 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						079715bb24 
					 
					
						
						
							
							Fix globalInfo/annotations.  
						
						
						
						
					 
					
						2014-10-29 22:36:10 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						0202692844 
					 
					
						
						
							
							Various bugfixes.  
						
						... 
						
						
						
						- Properly handle loading/searching of classes with EvA prefix
- Properly open Main window and set Logger when invoked from within JVM
- New F22Problem 
						
						
					 
					
						2014-10-29 17:44:34 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						668dcb6974 
					 
					
						
						
							
							New @Hidden annotation to permanently hide properties from the UI.  
						
						... 
						
						
						
						refs #13  
						
						
					 
					
						2014-10-28 20:35:35 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						24597ad01b 
					 
					
						
						
							
							Hide properties from Population.  
						
						... 
						
						
						
						refs #13  
						
						
					 
					
						2014-10-28 19:04:57 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						3a3ebc502b 
					 
					
						
						
							
							Cleanup.  
						
						
						
						
					 
					
						2014-10-28 18:53:52 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						90f006a239 
					 
					
						
						
							
							Hide problem in optimizers  
						
						... 
						
						
						
						refs #13  
						
						
					 
					
						2014-10-28 18:17:10 +01:00 
						 
				 
			
				
					
						
					 
					
						
						
							
						
						f752f2bcc6 
					 
					
						
						
							
							Update pom.xml  
						
						... 
						
						
						
						no ref
- Remove jchart2d until we can move to it
- Update SCM connector paths 
						
						
					 
					
						2014-10-27 20:39:11 +01:00