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  • 0baeebaf98 merging MK branch revs. 318:329. misc tool adds.; gui renaming with command line arguments for the client; Modified InterfaceOptimizer; DE update; Parameter adaption mechanisms, especially for PSO. Marcel Kronfeld 2009-07-17 09:01:20 +00:00
  • 61a6c4649e DGrid bug cleared (merging mk branch revs. 315-317). Marcel Kronfeld 2009-07-13 15:50:28 +00:00
  • d8fbb01e29 F13 doc and range modification. Marcel Kronfeld 2009-07-13 15:49:19 +00:00
  • bb4638cff9 Merging MK branch rev. 313: equals() methods fixed. Marcel Kronfeld 2009-07-07 11:58:41 +00:00
  • 21dd60a449 Corrected range for F8 (Ackley) Marcel Kronfeld 2009-07-07 08:02:34 +00:00
  • 173c75e73f Merging MK revs 304:309 - some editor updates, independent graph selection Marcel Kronfeld 2009-06-23 14:25:15 +00:00
  • 014258e1a4 Merging MK revs 298:303 - simple plot legend, some additions for statistics on feasibility Marcel Kronfeld 2009-06-22 15:44:24 +00:00
  • 52d707f0e0 MK branch revs. 263 & 295: GUI reordering, GP bugfix. Plus minors (JEInterface.m, tex2html) Marcel Kronfeld 2009-06-15 13:21:10 +00:00
  • b1a7fa7949 Making PBIL available from the Matlab interface. Marcel Kronfeld 2009-06-04 15:20:19 +00:00
  • 947ee034bd Updating GP - mk branch merge 287:292 Marcel Kronfeld 2009-05-14 07:39:34 +00:00
  • b948bb9da2 Minor GP update, mk branch merge rev. 286 Marcel Kronfeld 2009-05-08 13:14:24 +00:00
  • 4fbd2e3e08 GP area view should now work better Marcel Kronfeld 2009-05-08 13:06:21 +00:00
  • 12af483913 Minor patch to GPArea. MK branch merge. Marcel Kronfeld 2009-05-06 17:16:55 +00:00
  • d52694d3e8 GUI update, changes to GenericAreaEditor for GP, merging MK rev. 281 Marcel Kronfeld 2009-05-06 17:12:02 +00:00
  • 833ed14426 Minor bugfix. New web release version 2.035 Marcel Kronfeld 2009-05-05 15:08:26 +00:00
  • 4ecb159d5e Improve handling of externally set initial population in PSO - minor change. Marcel Kronfeld 2009-05-04 15:49:31 +00:00
  • a8234302f0 Improve handling of externally set initial population in PSO - adding a translation method. Marcel Kronfeld 2009-05-04 15:45:52 +00:00
  • 55655911fd Replacing SelectedTag with Enum for PSO topologies. Marcel Kronfeld 2009-05-04 15:30:59 +00:00
  • a39054a51f Updates for eNES implementation, synch mk branch rev. 272 Marcel Kronfeld 2009-04-06 17:03:43 +00:00
  • 3d075042aa Slight cleanup of the island model EA - synch of MK branch rev. 270 Marcel Kronfeld 2009-04-06 12:44:28 +00:00
  • 34fec6999b Merge MK 267:268: Some new functions (coming with NES tests) - missing adaption 2 Marcel Kronfeld 2009-04-02 09:50:42 +00:00
  • c68d95f93e Merge MK 265:266: Some new functions (coming with NES tests) - missing adaption Marcel Kronfeld 2009-04-02 09:46:26 +00:00
  • 3f4d270524 Merge MK 263:264: Some new functions (coming with NES tests) Marcel Kronfeld 2009-04-02 09:43:58 +00:00
  • ce386ba34c Minor visibility changes to ES. Marcel Kronfeld 2009-03-19 10:21:17 +00:00
  • e3a13a495e Updates to the ant file for easy web-distribution. Marcel Kronfeld 2009-03-18 16:54:31 +00:00
  • df0d2ced0e Committing GPL 3. Marcel Kronfeld 2009-03-18 15:54:07 +00:00
  • b41d34a634 Committing GPL 3. Marcel Kronfeld 2009-03-18 15:47:08 +00:00
  • 49f893e899 Changes from MK rev. 255, update to ParticleFilter, and tool tips dont break at points. Marcel Kronfeld 2009-03-18 11:10:02 +00:00
  • 6592ed69f2 Fix of IPOP-ES and deact. debug output for AbstractParameterControl Marcel Kronfeld 2009-03-17 18:46:37 +00:00
  • 8bb6f38c79 Commiting consolidation changes from MK branch rev. 252. Marcel Kronfeld 2009-03-17 18:12:37 +00:00
  • abafb57679 Merging MK branch revs. 243-249. Population sorting by fitness index, new package operators.paramcontrol for adaptive parameters, as well as minor stuff. Marcel Kronfeld 2009-03-17 17:26:06 +00:00
  • ac92a3a119 Minor cosmetics. Marcel Kronfeld 2009-03-11 14:29:54 +00:00
  • bcdfe0c400 Minor changes. Marcel Kronfeld 2009-03-11 14:18:15 +00:00
  • 08c88a3ed6 Some cosmetics, e.g. to older MOCCO classes Marcel Kronfeld 2009-03-11 13:30:48 +00:00
  • a347e220ff Patch to switch matlab CATCH syntax Marcel Kronfeld 2009-03-11 13:05:30 +00:00
  • 521a67705f Seemingly there may be an evil problem when the matlab interface is employed without GUI/ssh -XY. In addition to the System.out/err streams causing deadlocks during debug output, matlab seems to cache and suppress output strings sent to these streams, which, over time, congests heap memory. The solution is this update together with starting JEInterface at verbosity level 0. Marcel Kronfeld 2009-03-11 13:02:51 +00:00
  • c6da979e51 Updating the JEInterface Matlab code Marcel Kronfeld 2009-03-11 12:51:32 +00:00
  • 22f50cb45d Updating the JEInterface Java code Marcel Kronfeld 2009-03-10 08:58:16 +00:00
  • b14118bb6f Updating the JEInterface Matlab code Marcel Kronfeld 2009-03-10 08:53:50 +00:00
  • 50dfec343f Minor JEInterface changes. Marcel Kronfeld 2009-02-03 08:36:09 +00:00
  • 2cb9db4a9d Minor patch to the Matlab interface Marcel Kronfeld 2008-12-10 10:27:54 +00:00
  • 302ca1e02b Merging MK rev. 227 - several minor changes. Marcel Kronfeld 2008-12-10 09:56:15 +00:00
  • 245d8892ef Updates to the OptimizerFactory and the MatlabInterface. Better access to EvAClient. Marcel Kronfeld 2008-12-09 15:18:54 +00:00
  • c76f046faf Parent window parameter != null will make EvAClient not exit the VM on closing. (MK rev. 224) Marcel Kronfeld 2008-12-08 14:38:55 +00:00
  • cb8af51be6 EvAClient accepts a RemoteStateListener which is informed about optimization start/stop etc. (merging MK rev. 222). Marcel Kronfeld 2008-11-17 14:59:35 +00:00
  • eca74db612 providing GOParameters and predicate isOptFinished from client (merging 219,220 from MK branch). Marcel Kronfeld 2008-11-17 14:29:45 +00:00
  • 55014fd1d8 Cleared bug in JEInterface now allowing 1-D optimization problems Marcel Kronfeld 2008-10-10 13:22:12 +00:00
  • 3526a78f57 bugfix (in synch with mk branch) Marcel Kronfeld 2008-09-19 14:08:49 +00:00
  • d6f2ec1ad1 Merging mk rev. 211, 212: Matlab interface now works with binary data using uint32 (GAIndividualIntegerData). Marcel Kronfeld 2008-09-19 12:49:13 +00:00
  • 45d35a68e3 Minor cosmetics. (mk rev 209) Marcel Kronfeld 2008-09-17 09:58:26 +00:00
  • 8bdafeb957 Optional plotting as post process parameter. Marcel Kronfeld 2008-09-16 14:38:27 +00:00
  • 676fbb8498 Merging mk branch rev 205, added post-processing methods (nelder-mead, cma-es); some cosmetics. Marcel Kronfeld 2008-09-16 13:11:48 +00:00
  • 211c7a4477 BugBuster in PSO Marcel Kronfeld 2008-09-15 08:05:55 +00:00
  • 3f31f5d396 Minor cosmetics. Marcel Kronfeld 2008-09-12 10:14:28 +00:00
  • bcdc7d254e Merging mk branch rev 199, new Population event for initialization (introducing final Strings for the event names), renaming Indy.SetData to putData, replacing static rank-mu-CMA parameters by a population-associated structure; oh and the "Description" button has made room for a "Show Solution" button. Marcel Kronfeld 2008-09-12 09:57:36 +00:00
  • 137ef279ac Cosmetics for the Matlab-Interface. Marcel Kronfeld 2008-09-11 13:30:05 +00:00
  • 1782c0a4a7 Changes from MK branch rev 190-195, mainly cosmetics, some more enums, DE may do range checking, IPOP-CMA-ES works better from Matlab. Marcel Kronfeld 2008-09-11 13:27:53 +00:00
  • 49911cdcfd Small explanation of PostProcessParams. Marcel Kronfeld 2008-09-10 12:25:18 +00:00
  • 1a11229eff Cosmetics again. MK rev. 187. Marcel Kronfeld 2008-09-05 16:35:18 +00:00
  • ee67276827 Merging mk branch changes from rev 185, minor cleanup. Marcel Kronfeld 2008-09-05 13:03:27 +00:00
  • 29c655f874 Fixed problem in RankMuCMA mutator with large ranges Marcel Kronfeld 2008-09-04 11:15:08 +00:00
  • a9a8559e69 DefaultRange is public again. Marcel Kronfeld 2008-09-04 09:32:57 +00:00
  • 9d9f507d13 Refactored IndividualInterface and MutateXXDefault versions. DE/PSO now work on any InterfaceDataTypeDouble Marcel Kronfeld 2008-09-03 18:03:49 +00:00
  • 0fdb7edc52 Some lonely test classes moved to the research branch. Marcel Kronfeld 2008-09-03 17:37:37 +00:00
  • 8a5f03d87a Some adaptions of IPOP-ES Marcel Kronfeld 2008-08-29 15:36:14 +00:00
  • 8258173239 Cleared a bug in PSO (missing eval on initialization due to 'reset' flag) Marcel Kronfeld 2008-08-29 15:04:20 +00:00
  • 68241a0dc0 Larger commit, adding IPOP-ES and RankMuCMA mutator. Revs. 130-174 from MK-branch should be merged with this. Marcel Kronfeld 2008-08-29 14:04:32 +00:00
  • c2a3f06498 Repaired "change color" option in plot context menu. Marcel Kronfeld 2008-08-29 09:36:07 +00:00
  • 3e948f3807 Cosmetics Marcel Kronfeld 2008-08-28 17:18:54 +00:00
  • b9d392738d AbstractOptimizationProblem is now in sync with mk branch Marcel Kronfeld 2008-08-28 13:30:12 +00:00
  • af3e5827a4 Population is now in sync with mk branch Marcel Kronfeld 2008-08-28 13:24:14 +00:00
  • e2e3e504a7 Minor cosmetics. Marcel Kronfeld 2008-08-28 13:12:21 +00:00
  • 4c77fb6927 Changes due to NichePSO and ANPSO (M.Aschoff) Marcel Kronfeld 2008-08-28 13:10:25 +00:00
  • 640feb82b7 Nearly white function area. Marcel Kronfeld 2008-08-27 09:29:34 +00:00
  • 2a215953eb Adding an enum editor for the GUI. Merge from MK branch rev. 157 Marcel Kronfeld 2008-08-26 15:02:41 +00:00
  • 5690097d44 Bug in FitnessValueTerminator. Marcel Kronfeld 2008-08-13 16:04:21 +00:00
  • 7530638ce2 Merging mk branch rev 152:153 Marcel Kronfeld 2008-08-13 08:17:07 +00:00
  • 0f07c0a03f Sync with mk branch. Marcel Kronfeld 2008-08-13 08:09:23 +00:00
  • 88b32e9e68 CMA rename was missing. Marcel Kronfeld 2008-08-13 08:06:34 +00:00
  • 249ceb6f3b mk branch 146, 147: renaming some vars in CMA and the CMA type Marcel Kronfeld 2008-08-11 15:34:31 +00:00
  • fe56e230ff ant targets for the other packages Marcel Kronfeld 2008-08-07 14:50:13 +00:00
  • 93fdeff913 Merging mk rev 140:141 (preloader thread, InterfaceProblemDouble) Marcel Kronfeld 2008-08-07 14:32:27 +00:00
  • 72c83a3c77 minor cosmetics merge from mk rev 139 Marcel Kronfeld 2008-08-06 11:51:59 +00:00
  • 18f3cb8620 Merging mk branch rev 136:137 (tuning 2d-graphics) Marcel Kronfeld 2008-08-05 15:01:59 +00:00
  • 8ec49d3551 Moving inference.metabolic to probs repository. Marcel Kronfeld 2008-08-04 15:22:59 +00:00
  • 85e0b5674b Moving des package to eva2.tools.des Marcel Kronfeld 2008-08-04 15:16:03 +00:00
  • 270dc86d64 Nice names for the metabolic problems. Marcel Kronfeld 2008-08-04 15:11:44 +00:00
  • 18b63d9d97 Merging mk branch rev 130. Marcel Kronfeld 2008-08-04 14:59:40 +00:00
  • 99e5ca1450 The metabolic models of Corynebacterium glutamicum are now part of EvA2. Andreas Dräger 2008-07-30 15:44:40 +00:00
  • ad67392637 Minor changes to StatisticsDummy, merging mk branch rev 126:127 Marcel Kronfeld 2008-07-30 14:59:35 +00:00
  • c25ca2ebaa Some additions to Population (mk branch rev 125) Marcel Kronfeld 2008-07-30 13:03:06 +00:00
  • 8ab56480a3 Merging changes from mk-branch 122:123. Marcel Kronfeld 2008-07-29 09:20:56 +00:00
  • b34c349e00 The ant-file now hopefully does not rely on all packages any more. Set the sub-project paths to include them in compilation. Marcel Kronfeld 2008-07-24 14:08:24 +00:00
  • b400dbf3f3 Removed unnecessary import statements. Andreas Dräger 2008-07-17 09:12:37 +00:00
  • 66d02fa404 Tuning SimpleProblemWrapper. Marcel Kronfeld 2008-07-15 08:23:44 +00:00
  • 982caa7f4c Version 2.027, renamed set methods in individual interfaces to help avoid misinterpretations. Marcel Kronfeld 2008-07-10 09:06:07 +00:00
  • 7697d00bf7 merging rev 114 from mk-branch - added possibility to plot population measures Marcel Kronfeld 2008-07-04 15:24:07 +00:00
  • 3310571776 Forgot to remove dead class. Marcel Kronfeld 2008-07-03 13:18:51 +00:00
  • 8d14ff6c1b Repaired GenericArrayEditor (merge from mk-branch, rev. 110) Marcel Kronfeld 2008-07-03 13:13:34 +00:00
  • 34075b8c97 Some changes from branch mkron Marcel Kronfeld 2008-06-27 14:52:49 +00:00