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Author SHA1 Message Date
halfdan 3af0ea5c4f Add tests for Pair 
refs #53
 2015-12-17 20:49:28 +01:00
halfdan 965049c4cb Subscript indices in PropertySheetPanel 
- add subscriptIndices to StringTools
- add tests
 2015-12-15 11:02:21 +01:00
halfdan b58a589b24 Test and refactor translateGreek 
closes #55
 2015-12-15 10:32:51 +01:00
halfdan f1b9f19dde Extract translateGreek to StringTools 
refs #55
 2015-12-15 09:41:27 +01:00
halfdan ee92cc009a Add TitledSeperators to PropertySheetPanel 2015-12-15 09:38:22 +01:00
halfdan 97fcc1c3d0 Move objectChooser to sub panel and prefix with Type label. 2015-12-15 09:37:55 +01:00
halfdan 29d53e94dc Fix optimize() method in OptimizerFactory 2015-12-15 09:34:38 +01:00
halfdan 0e35f8e0f4 Better looking checkboxes. 
- Booleans are now shown as centered checkboxes
- Refactored detail button to class
 2015-12-14 14:29:18 +01:00
halfdan 7457b33a5d Fix legend boundary box floating point issue. 
refs #48
 2015-12-09 15:32:27 +01:00
halfdan f0716a3576 Improve legend display 
- Draw box around legend
- Prefix graph titles with colored line
- Allow toggling of grid in FunctionArea

refs #48
 2015-12-09 15:07:00 +01:00
halfdan fa1c0a052e Merge branch 'master' of gitlab.cs.uni-tuebingen.de:eva2/eva2 2015-12-09 11:39:11 +01:00
halfdan 7da4880363 Merge remote-tracking branch 'origin/master' 2015-12-07 21:16:51 +01:00
halfdan 0132c09c69 Several fixes, cleanup. 2015-01-13 14:20:59 +01:00
halfdan 01ae0fb9bd Added Zakharov problem 2014-12-20 13:26:59 +01:00
halfdan 76bbf3ca2f Problem documentation. 2014-12-20 13:10:34 +01:00
halfdan 164ccd8a9d Don't set the native Look and Feel on Linux 2014-12-08 16:47:16 +01:00
halfdan f01258fff1 Fix Step function and add test for known optimum. 2014-12-01 19:22:30 +01:00
halfdan b19d1c5d39 Fix GGABC (Gbest-Guided) and correctly count function calls. 2014-12-01 18:41:12 +01:00
halfdan 794eeed998 Fix NullPointerException in PropertyCellRenderer 2014-12-01 16:12:51 +01:00
halfdan b1e5c7a410 Properly deactivate auto-aging 2014-12-01 12:32:26 +00:00
halfdan b75da91ead Add scout count info as additional data for output. 2014-12-01 12:23:12 +00:00
halfdan d80ac15142 Implement isAutoAging to deactivate auto-aging of individuals on incrGeneration. 
Used by various instances of the ABC
 2014-12-01 12:11:14 +00:00
halfdan d7b677c6b8 Added test for F23 Problem 2014-11-26 21:51:04 +01:00
halfdan 2e9343bf74 Add new Generalized Schaffer function as F23Problem 
Preserve best solution found in ABC
 2014-11-24 10:38:48 +01:00
halfdan 801c3513e7 Refactoring of ABC. 2014-11-23 19:18:05 +01:00
halfdan 510170be50 Refactored ABC 
refs #36
 2014-11-23 14:56:42 +01:00
halfdan 08f7b92f86 Fix Artificial Bee Colony by using inverse fitness probability 2014-11-22 19:34:04 +01:00
halfdan 6ae2aa28b9 Finally getting rid of the eva2.optimization.go package 
- Moved GUI related stuff (StandaloneOptimization, MOCCOStandalone, ...) to eva2.gui
- Moved InterfaceOptimizationParameters and implementations up to eva2.optimization
- Moved Processor out of modules
 2014-11-22 11:48:17 +01:00
halfdan 031e5b432a Add Population serializer. 2014-11-18 19:32:19 +01:00
halfdan ad7a5ea86c New CPUPanel to show process load vs. system load. 
Small cleanup.
 2014-11-18 17:15:40 +01:00
halfdan 91549862f1 Removed a few tiptexts from GA 2014-11-18 16:02:35 +01:00
halfdan 0479716f43 Refactor DE and add Rand/2 strategy 2014-11-18 11:34:59 +01:00
halfdan 563c407f0b New --version flag to show current EvA2 version. 2014-11-18 11:34:43 +01:00
halfdan 7f5f3c5cea Show useful info for classes with subtypes. 
closes #35
- Show assignable subtypes
- Rename YamlStatistics to CommandLineStatistics
 2014-11-16 14:47:17 +01:00
halfdan e5c8322d78 Properly format --help output. 
refs #35
 2014-11-16 00:51:00 +01:00
halfdan 35bd5c4a9e Added ParameterGenerator for Command Line interface. 
Added --help parameter to show help for CLI mode.

refs #35
 2014-11-15 12:00:06 +01:00
halfdan 17263cc023 Graceful fallback when .yml files fail to load. 
Only save params once per optimization.
 2014-11-15 07:08:14 +01:00
halfdan 667e069bcc Initialize Look and Feel seperately. 2014-11-15 06:38:10 +01:00
halfdan ca108a5d97 Fix performance issue with CLI execution (SnakeYAML doesn't perform well 
when serializing large objects)
Implement easier access for terminators.
 2014-11-14 17:55:23 +01:00
halfdan 5a80cb781e Processor thread now has a name. 
Fix several html files.
 2014-11-14 15:38:26 +01:00
halfdan b8b44b7644 Code cleanup, comments, javadoc fixes. 2014-11-14 14:33:56 +01:00
halfdan 553002c834 Complete Yaml output for CLI mode. 
Cleanup of AbstractStatistics
 2014-11-14 11:32:05 +01:00
halfdan 2e1f862718 YamlStatistics mostly implemented. 2014-11-13 18:22:14 +01:00
halfdan c3eddfbee4 Removes deprecated method createNextGenerationPerformed from 
InterfaceStatistics. This was only used in EvA2ESModel.
 2014-11-13 17:57:49 +01:00
halfdan ca70b48bd2 Fixed comment fuckup where simple was replaced with eva2.problems.simple 
Implements YamlStatistics in cli.Main
A few fixes in the processor to allow GUI-less optimization
 2014-11-13 17:49:40 +01:00
halfdan 3627d33df5 Cleanup. 2014-11-13 17:23:35 +01:00
halfdan 153b6e3974 Correctly repaint JobList when optimization is done. 2014-11-13 17:13:52 +01:00
halfdan 4326044a1b Organize imports. 
Fix missing data header in F8Problem.
Fix several tip texts.
 2014-11-13 14:50:13 +01:00
halfdan 83194f4d04 Hide stats field and use parameter annotation. 2014-11-13 11:06:32 +01:00
halfdan a2ddf25ce6 Random cleanup and start of CLI log implementation. 2014-11-12 19:23:21 +01:00
halfdan 9ea3f4d464 Fix image references and name changes. 2014-11-12 19:23:03 +01:00
halfdan 014fd85beb Refactor EVAHELP and remove it. 2014-11-12 14:35:58 +01:00
halfdan 40df065a58 Fix the png export by simply using the FunctionArea graphics. 2014-11-11 17:01:31 +01:00
halfdan 837c4fea32 JavaDoc fixes and larger code cleanup. 2014-11-11 16:58:43 +01:00
halfdan 7c896fea8d Test tTestEqSize 
refs #34
 2014-11-11 02:00:58 +01:00
halfdan 1af305ae3d Fix variance implementation and add tests to Math package. 
refs #34
 2014-11-10 17:46:34 +01:00
halfdan 6386c03f43 Remove Generic from most editors. They are not generic at all. 2014-11-09 18:57:50 +01:00
halfdan 8f35b0c6d4 Rename StatisticalParameters to remove EvA in name. 2014-11-09 18:50:15 +01:00
halfdan 88ef09db21 Ensure size of population is set when target size is set. 2014-11-07 23:44:34 +01:00
halfdan 7756ceac4e Code cleanup through static analysis. 2014-11-07 23:43:17 +01:00
halfdan 453df310ee Remove crap comments. 2014-11-07 22:58:41 +01:00
halfdan d778dc6e24 Make Population a typed ArrayList 2014-11-07 22:45:06 +01:00
halfdan 1dedb13dc9 Fix bug in humaniseCamelCase. 2014-11-07 21:59:28 +01:00
halfdan 7605dacb8a CLI adjustments 2014-11-06 15:54:57 +01:00
halfdan 3358a469a3 Fix bug in PSO implementation. 2014-11-06 11:27:32 +01:00
halfdan b7749711ca Remove last uses of SelectedTag from core package 
refs #32
 2014-11-06 10:25:51 +01:00
halfdan 93aff6d876 Refactor EnumEditor and actually use it. 
refs #32
 2014-11-05 20:00:00 +01:00
halfdan 62e436274c Removed SelectedTag from ScatterSearch. 
refs #32
 2014-11-05 19:02:39 +01:00
halfdan e18f9e3b38 Replace SelectedTag with useful enum. 
refs #32
 2014-11-05 18:53:47 +01:00
halfdan a91d9fbecc Close dialogs on escape key press. 2014-11-05 18:53:23 +01:00
halfdan a3cf5971fb Remove AlgType Selected in PSO 
refs #32
 2014-11-04 23:20:15 +01:00
halfdan 43768d1f96 Removes SelectedType where unnecessary. 
refs #32
- Replaced SelectedType with an enum in CombinedTerminator
 2014-11-04 22:54:13 +01:00
halfdan cb89110e86 Style adjustments for MacOS 2014-11-04 21:44:24 +01:00
halfdan efe1a1188b Stuff. 2014-11-04 16:33:55 +01:00
halfdan b77cda3046 Cleaner code. 2014-11-04 15:18:26 +01:00
halfdan 049304e9c1 Removed unused classes (dating back to < 2007..) 2014-11-03 18:50:35 +01:00
halfdan a08655a60f Add load/store to configurations. 
refs #31
 2014-11-03 16:26:01 +01:00
halfdan 70dd824d13 Remove globalInfo completely 
closes #9
- Remove all remaining globalInfo methods.
- Remove globalInfo handling.
- WIN.
 2014-11-02 19:04:17 +01:00
halfdan 551b14fe3d Load and store Optimizations as YAML. 
refs #31
- Introduces custom BeanSerializer using SnakeYAML
- Removed previous json package
- Introduces eva2.yaml package
- Hidden properties are not saved
- Reintroduces output in text window
 2014-11-02 17:53:42 +01:00
halfdan 173ebd67c6 Cleanup as well as moving TipText methods to useful @Parameter 
annotations.
 2014-11-02 16:10:57 +01:00
halfdan 6bb4616763 Added enum handling to CLI mode. 2014-11-02 16:10:44 +01:00
halfdan 83ee77f5af Simplify appendArrays method to use generic type. 2014-11-02 15:33:56 +01:00
halfdan ea4b12efab Add snakeyaml dependency 2014-11-02 14:53:40 +01:00
halfdan 8104c9baf7 Rename more init() methods to initialize() 2014-11-02 14:53:27 +01:00
halfdan 97d79612c2 Merge branch '30-dynamic-cli' 2014-11-02 14:03:59 +01:00
halfdan edaa58bd5a Remove apache, gson, cli, reflection dependencies for slimmer EvA2 
package.
 2014-11-02 14:03:23 +01:00
halfdan 89402e0b05 Hide several elements from the UI 2014-11-02 13:40:31 +01:00
halfdan 29a1bb64e3 Performance Optimization in CLI mode 
refs #30
- Abort object building if all params found
 2014-11-02 13:39:58 +01:00
halfdan 2a2162c5da More @Parameters and a fix for empty getters. 2014-11-01 18:59:28 +01:00
halfdan ee73f5dbe5 Renamed init to initialize. 
Added @Parameter annotation to EAIndividual
 2014-11-01 18:32:21 +01:00
halfdan 9efebe8b4b Initial commit of new dynamic CLI mode. 2014-11-01 18:20:58 +01:00
halfdan d0268527b0 Rename InterfaceStatisticsParameter to InterfaceStatisticsParameters for 
consistentcy with OptimizationParameters
 2014-11-01 18:18:58 +01:00
halfdan d676e78f61 Few more @Parameter annotations where useful. 2014-11-01 17:57:56 +01:00
halfdan cb83280a55 Properly show TipTexts again 
refs #29
 2014-11-01 14:53:28 +01:00
halfdan 4909cdd6bc Refactor @Parameter annotation to be applied to setter methods. 
fixes #29
- Change Parameter annotation to exist on methods
- Add default value to name field to make it optional
- Adjust classes that already use the annotation
 2014-11-01 13:27:33 +01:00
halfdan 032a4ce087 Added new convertToUnderscore method. 2014-11-01 13:27:09 +01:00
halfdan 9a8efc403e Move InterfacePopulationChangedEventListener to 
eva2.optimization.population.
 2014-10-31 19:05:38 +01:00
halfdan c8de290e4c Random refactoring to make EvA2Problems work again. 2014-10-31 18:36:15 +01:00
halfdan 3ac628e85f Rename init method to initialize and fix a bug for SBMLsimulator interop 2014-10-31 15:21:13 +01:00
halfdan ba814ec492 Remove hostname from Main 2014-10-31 10:54:51 +01:00